RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 KLK9Q9UKQ9 250 aa1.54□□□□□ -2.16
SCFD1-219ENST00000556413 PAIP2BQ9ULR5 123 aaKnown RBP1.54□□□□□ -2.16
SCFD1-219ENST00000556413 RFNGQ9Y644 331 aa1.54□□□□□ -2.16
SCFD1-219ENST00000556413 TRAV26-1A0A087WT03 109 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 TRAV1-2A0A0B4J238 106 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 TRDV1A0A1B0GX56 115 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 ERICH4A6NGS2 130 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 CEBPZOSA8MTT3 80 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 ZNF705FA8MVS1 300 aaPredicted RBP1.53□□□□□ -2.16
SCFD1-219ENST00000556413 GPR31O00270 319 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 LECT2O14960 151 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 CCNKO75909 580 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 ATP5HO75947 161 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 HBE1P02100 147 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 IGLC1P0CG04 106 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 SPART-AS1P0CW21 52 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 HLA-DRB4P13762 266 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 NPPCP23582 126 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 F2RP25116 425 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 NPY1RP25929 384 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 OR10J1P30954 320 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 UBE2AP49459 152 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 PPT1P50897 306 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 PAFAH1B2P68402 229 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 PRCDQ00LT1 54 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 HIST1H1AQ02539 215 aaPredicted RBP1.53□□□□□ -2.16
SCFD1-219ENST00000556413 CLINT1Q14677 625 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 POU2AF1Q16633 256 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 KLK9Q2XQG4 91 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 SCGB2B2Q4G0G5 96 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 SOHLH1Q5JUK2 328 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 TMEM69Q5SWH9 247 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 PRSS54Q6PEW0 395 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 MORN3Q6PF18 240 aaPredicted RBP1.53□□□□□ -2.16
SCFD1-219ENST00000556413 FAT4Q6V0I7 4981 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 ZNF705AQ6ZN79 300 aaPredicted RBP1.53□□□□□ -2.16
SCFD1-219ENST00000556413 Q6ZQT7 251 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 Q6ZS49 121 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 PPP1R14BQ96C90 147 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 LINC00477Q96M19 166 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 TMEM56Q96MV1 263 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 NDFIP1Q9BT67 221 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 ENY2Q9NPA8 101 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 NOP10Q9NPE3 64 aaKnown RBP1.53□□□□□ -2.16
SCFD1-219ENST00000556413 SCN3BQ9NY72 215 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 PRNDQ9UKY0 176 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 HLA-DRB4X5D2U9 266 aa1.53□□□□□ -2.16
SCFD1-219ENST00000556413 MUC4Q99102 2169 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 IGKV1D-37A0A075B6S9 117 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 TRAV8-2A0A0B4J237 113 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 A0A0J9YX75 114 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 LINC00854A0A1B0GVQ3 168 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 A0A1B0GVX0 72 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 SMCO3A2RU48 225 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 H3BP45 60 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 CYB5BO43169 146 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 CRXO43186 299 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 RBFOX2O43251 390 aaKnown RBP eCLIP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 HPGDSO60760 199 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 CTXN2P0C2S0 81 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 OR5AC1P0C628 307 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 PSMA1P25786 263 aaKnown RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 CRYBB3P26998 211 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 SNCAP37840 140 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 CBX5P45973 191 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 PIGPP57054 158 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 TCTAP57738 103 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 HSPE1P61604 102 aaKnown RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 TSPAN5P62079 268 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 NCS1P62166 190 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 RHOBP62745 196 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 ERHP84090 104 aaKnown RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 PSG9Q00887 426 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 WFDC2Q14508 124 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 ESRGQ1W209 222 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 RRN3P1Q2M238 152 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 COA6Q5JTJ3 125 aaKnown RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 AMTNQ6UX39 209 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 FOXI2Q6ZQN5 318 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 Q6ZRN7 208 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 LINC00173Q6ZV60 143 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 PACRGLQ8N7B6 248 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 ZNF738Q8NE65 137 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 OR11H7Q8NGC8 314 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 OR4C16Q8NGL9 310 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 OR1S2Q8NGQ3 325 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 OR13C8Q8NGS7 320 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 RMI2Q96E14 147 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 LINC01587Q99440 93 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 RSG1Q9BU20 258 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 PDCD10Q9BUL8 212 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 NAA50Q9GZZ1 169 aaKnown RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 SAV1Q9H4B6 383 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 DUSP21Q9H596 190 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 MRPL16Q9NX20 251 aaKnown RBP1.52□□□□□ -2.17
SCFD1-219ENST00000556413 COMMD3Q9UBI1 195 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 TPRKBQ9Y3C4 175 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 GOLT1BQ9Y3E0 138 aa1.52□□□□□ -2.17
SCFD1-219ENST00000556413 FLG2Q5D862 2391 aaPredicted RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms