RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 ODF3L2Q3SX64 289 aa7.59□□□□□ -1.19
SRP54-208ENST00000555557 CDPF1Q6NVV7 123 aa7.59□□□□□ -1.19
SRP54-208ENST00000555557 HIST3H2BBQ8N257 126 aa7.59□□□□□ -1.19
SRP54-208ENST00000555557 OR10J6PQ8NGY7 276 aa7.59□□□□□ -1.19
SRP54-208ENST00000555557 A0A087WWC5 75 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 CT45A10P0DMU9 189 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 INSL3P51460 131 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 TMEM78Q5T7P6 136 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 PRR27Q6MZM9 219 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 C9orf47Q6ZRZ4 202 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 PRR25Q96S07 402 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 PRO1933Q9H354 126 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 FBN3Q75N90 2809 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 A0A0J9YX75 114 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 J3KRW8 73 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 OXLD1Q5BKU9 147 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 ACTL10Q5JWF8 245 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 LINC00322Q6ZN03 302 aaPredicted RBP7.58□□□□□ -1.2
SRP54-208ENST00000555557 OR4B1Q8NGF8 309 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 OR2K2Q8NGT1 345 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 NDUFAF3Q9BU61 184 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 MLST8Q9BVC4 326 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 ZNF492Q9P255 531 aa7.58□□□□□ -1.2
SRP54-208ENST00000555557 CMYA5Q8N3K9 4069 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 TRBV6-1A0A0K0K1D8 114 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 NPIPB6E9PJ23 425 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 ZNF138P52744 262 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 PNRC1Q12796 327 aaPredicted RBP7.57□□□□□ -1.2
SRP54-208ENST00000555557 BEAN1Q3B7T3 259 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 EBLN2Q6P2I7 272 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 TMEM183AQ8IXX5 376 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 ZC2HC1AQ96GY0 325 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 MCRIP2Q9BUT9 160 aaKnown RBP7.57□□□□□ -1.2
SRP54-208ENST00000555557 RNASE7Q9H1E1 156 aaKnown RBP7.57□□□□□ -1.2
SRP54-208ENST00000555557 WFDC10AQ9H1F0 79 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 ZFP30Q9Y2G7 519 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 LY96Q9Y6Y9 160 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 AGRNO00468 2067 aa7.57□□□□□ -1.2
SRP54-208ENST00000555557 GCGP01275 180 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 KIR3DS1Q14943 382 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 FOXI2Q6ZQN5 318 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 LINC00477Q96M19 166 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 OR11H12B2RN74 326 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BKO60814 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BJP06899 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BOP23527 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BBP33778 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 CRIP1P50238 77 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 ZNF80P51504 273 aaPredicted RBP7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BDP58876 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BCP62807 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST2H2BEQ16778 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 ANKRD39Q53RE8 183 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.56□□□□□ -1.2
SRP54-208ENST00000555557 SAPCD1Q5SSQ6 148 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 Q6ZQT7 251 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BHQ93079 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BNQ99877 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 HIST1H2BMQ99879 126 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 C19orf73Q9NVV2 129 aa7.56□□□□□ -1.2
SRP54-208ENST00000555557 FBLL1A6NHQ2 334 aaKnown RBP7.55□□□□□ -1.2
SRP54-208ENST00000555557 H3BMM0 161 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 FABP4P15090 132 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 ERVFC1-1P60608 527 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 JOSD1Q15040 202 aaPredicted RBP7.55□□□□□ -1.2
SRP54-208ENST00000555557 ELOBQ15370 118 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 PRR9Q5T870 116 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 SFRP2Q96HF1 295 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 PACRGQ96M98 296 aaPredicted RBP7.55□□□□□ -1.2
SRP54-208ENST00000555557 NDFIP1Q9BT67 221 aa7.55□□□□□ -1.2
SRP54-208ENST00000555557 RBMY1BA6NDE4 496 aaKnown RBP7.54□□□□□ -1.2
SRP54-208ENST00000555557 RBMY1EA6NEQ0 496 aaKnown RBP7.54□□□□□ -1.2
SRP54-208ENST00000555557 RBMY1DP0C7P1 496 aaKnown RBP7.54□□□□□ -1.2
SRP54-208ENST00000555557 HLA-DRB4P13762 266 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 FXYD7P58549 80 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 PRR31Q5SQ13 230 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 SMIM12Q96EX1 92 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 FAM19A4Q96LR4 140 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 HLA-DRB4X5D2U9 266 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 B4DEV8 164 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 M0R2Z0 102 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 PHOX2AO14813 284 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 CXCL1P09341 107 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 IBA57Q5T440 356 aaKnown RBP7.54□□□□□ -1.2
SRP54-208ENST00000555557 DEFB125Q8N687 156 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 ZFAND2AQ8N6M9 145 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 NUDT10Q8NFP7 164 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 NUDT11Q96G61 164 aa7.54□□□□□ -1.2
SRP54-208ENST00000555557 TRAV12-2A0A075B6T6 113 aa7.53□□□□□ -1.2
SRP54-208ENST00000555557 DUSP14O95147 198 aaKnown RBP7.53□□□□□ -1.2
SRP54-208ENST00000555557 CA1P00915 261 aaPredicted RBP7.53□□□□□ -1.2
SRP54-208ENST00000555557 GPX1P07203 203 aa7.53□□□□□ -1.2
SRP54-208ENST00000555557 TRGC1P0CF51 173 aa7.53□□□□□ -1.2
SRP54-208ENST00000555557 RNASE4P34096 147 aaKnown RBP7.53□□□□□ -1.2
SRP54-208ENST00000555557 SPINK13Q1W4C9 94 aa7.53□□□□□ -1.2
SRP54-208ENST00000555557 AMTNQ6UX39 209 aa7.53□□□□□ -1.2
SRP54-208ENST00000555557 OR10G8Q8NGN5 311 aa7.53□□□□□ -1.2
SRP54-208ENST00000555557 C19orf71A6NCJ1 209 aa7.52□□□□□ -1.2
SRP54-208ENST00000555557 WIPF1O43516 503 aa7.52□□□□□ -1.2
SRP54-208ENST00000555557 SH2D1AO60880 128 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms