RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ZNF502Q8TBZ5 544 aa13.52□□□□□ -0.24
SYNE3-202ENST00000553340 AGPAT4-IT1Q9H0P7 198 aa13.52□□□□□ -0.24
SYNE3-202ENST00000553340 GOSR1O95249 250 aa13.52□□□□□ -0.25
SYNE3-202ENST00000553340 C11orf21Q9P2W6 132 aa13.52□□□□□ -0.25
SYNE3-202ENST00000553340 AKAP13Q12802 2813 aa13.52□□□□□ -0.25
SYNE3-202ENST00000553340 ATMQ13315 3056 aa13.52□□□□□ -0.25
SYNE3-202ENST00000553340 BSNQ9UPA5 3926 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 CLEC3BP05452 202 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 NRACQ8N912 160 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 GVINP1Q7Z2Y8 2422 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 TAL2Q16559 108 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 TMEM78Q5T7P6 136 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 MINOS1Q5TGZ0 78 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 UFC1Q9Y3C8 167 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 MINOS1-NBL1R4GNA1 71 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 PIEZO2Q9H5I5 2752 aa13.51□□□□□ -0.25
SYNE3-202ENST00000553340 TEX48A0A1B0GUV7 120 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 FAM90A27PA6NNH2 459 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 FAM110DQ8TAY7 271 aaPredicted RBP13.5□□□□□ -0.25
SYNE3-202ENST00000553340 A0A087WX48 190 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 IGHV3-66A0A0C4DH42 116 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 E9PLD3 99 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 C1orf122Q6ZSJ8 110 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 Q8N9W7 124 aa13.5□□□□□ -0.25
SYNE3-202ENST00000553340 TRAV26-2A0A0B4J265 109 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 IGHV7-4-1A0A0J9YVY3 117 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 GRNP28799 593 aaKnown RBP13.49□□□□□ -0.25
SYNE3-202ENST00000553340 MAPKAPK5-AS1Q8N8E1 139 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 WNK2Q9Y3S1 2297 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 PLNP26678 52 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 ECSCRQ19T08 205 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 MSRB2Q9Y3D2 182 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 TTC28Q96AY4 2481 aa13.49□□□□□ -0.25
SYNE3-202ENST00000553340 SPANXN1Q5VSR9 72 aa13.48□□□□□ -0.25
SYNE3-202ENST00000553340 IGLL5B9A064 214 aa13.48□□□□□ -0.25
SYNE3-202ENST00000553340 ABCA4P78363 2273 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 IGHV3OR16-13A0A075B7E8 117 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 IGHV3-74A0A0B4J1X5 117 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 CLPSL1A2RUU4 121 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 FOXI2Q6ZQN5 318 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 HIF1ANQ9NWT6 349 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 IGHV4-4A0A075B6R2 117 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 F8W1H4 67 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 MRPL53Q96EL3 112 aaKnown RBP13.47□□□□□ -0.25
SYNE3-202ENST00000553340 ZNF479Q96JC4 524 aa13.47□□□□□ -0.25
SYNE3-202ENST00000553340 TRAV8-2A0A0B4J237 113 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.46□□□□□ -0.25
SYNE3-202ENST00000553340 K7EMI3 77 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 EFNA4P52798 201 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 C12orf74Q32Q52 190 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 FBXL19-AS1Q494R0 122 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 CLEC19AQ6UXS0 136 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 HIST1H4GQ99525 98 aa13.46□□□□□ -0.25
SYNE3-202ENST00000553340 ANKHD1Q8IWZ3 2542 aaKnown RBP13.46□□□□□ -0.26
SYNE3-202ENST00000553340 C9orf47Q6ZRZ4 202 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 C8orf86Q6ZUL3 223 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 METTL26Q96S19 204 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 ATP6V0E1O15342 81 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 KLK9Q2XQG4 91 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 MRAP2Q96G30 205 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 KLK9Q9UKQ9 250 aa13.45□□□□□ -0.26
SYNE3-202ENST00000553340 H7C1H1 209 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 CCDC140Q96MF4 163 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 IGHV3-49A0A0A0MS15 119 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 TRAV12-1A0A0B4J245 112 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 F8VRH5 84 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 SAMD13Q5VXD3 122 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 SMIM2Q9BVW6 85 aa13.44□□□□□ -0.26
SYNE3-202ENST00000553340 J3QR89 54 aa13.43□□□□□ -0.26
SYNE3-202ENST00000553340 H3BVH4 76 aa13.43□□□□□ -0.26
SYNE3-202ENST00000553340 WFDC2Q14508 124 aa13.43□□□□□ -0.26
SYNE3-202ENST00000553340 EEF1AKMT3Q96AZ1 226 aa13.43□□□□□ -0.26
SYNE3-202ENST00000553340 ZNF207O43670 478 aaKnown RBP13.43□□□□□ -0.26
SYNE3-202ENST00000553340 SPANXB1Q9NS25 103 aaPredicted RBP13.43□□□□□ -0.26
SYNE3-202ENST00000553340 ZNF292O60281 2723 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 LRBAP50851 2863 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 OR11H12B2RN74 326 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 ORMDL2Q53FV1 153 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 Q6ZQT7 251 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 OR11H1Q8NG94 326 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 OR11H2Q8NH07 326 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 CSMD1Q96PZ7 3565 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 AGRNO00468 2067 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 H3BMG7 143 aa13.42□□□□□ -0.26
SYNE3-202ENST00000553340 ZFP36P26651 326 aaKnown RBP13.41□□□□□ -0.26
SYNE3-202ENST00000553340 C11orf71Q6IPW1 123 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 CHTOPQ9Y3Y2 248 aaKnown RBP13.41□□□□□ -0.26
SYNE3-202ENST00000553340 DCHS2Q6V1P9 2916 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 TRBV7-3A0A075B6L6 115 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 TRBV7-1A0A0A6YYK4 115 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 MYMXA0A1B0GTQ4 84 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 LINC01619G3V211 115 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 G3V318 75 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 SCGB3A1Q96QR1 104 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 SIGMAR1Q99720 223 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 SIRPDQ9H106 197 aa13.41□□□□□ -0.26
SYNE3-202ENST00000553340 RIF1Q5UIP0 2472 aaKnown RBP13.4□□□□□ -0.26
SYNE3-202ENST00000553340 RRN3P1Q2M238 152 aa13.4□□□□□ -0.26
SYNE3-202ENST00000553340 C16orf92Q96LL3 132 aa13.4□□□□□ -0.26
SYNE3-202ENST00000553340 SLC25A16P16260 332 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms