RNA–Protein interactions for RNA: ENST00000539208.5

GNE-204, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 2 BASIC

Gene GNE, Length 2,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-204ENST00000539208 MSRB1Q9NZV6 116 aa13.65□□□□□ -0.22
GNE-204ENST00000539208 LAMTOR2Q9Y2Q5 125 aa13.65□□□□□ -0.22
GNE-204ENST00000539208 USP9XQ93008 2570 aaPredicted RBP13.65□□□□□ -0.22
GNE-204ENST00000539208 COL12A1Q99715 3063 aa13.65□□□□□ -0.22
GNE-204ENST00000539208 OVOL1O14753 267 aa13.65□□□□□ -0.22
GNE-204ENST00000539208 RPLP1P05386 114 aaKnown RBP13.65□□□□□ -0.22
GNE-204ENST00000539208 A0A096LNJ9 63 aa13.64□□□□□ -0.23
GNE-204ENST00000539208 TSPOP30536 169 aa13.64□□□□□ -0.23
GNE-204ENST00000539208 ZNF738Q8NE65 137 aa13.64□□□□□ -0.23
GNE-204ENST00000539208 VPS13CQ709C8 3753 aa13.64□□□□□ -0.23
GNE-204ENST00000539208 LOC389332A0A1B0GUA5 103 aa13.64□□□□□ -0.23
GNE-204ENST00000539208 FAM106AQ4KMX7 169 aa13.64□□□□□ -0.23
GNE-204ENST00000539208 TCAPO15273 167 aa13.63□□□□□ -0.23
GNE-204ENST00000539208 NPYP01303 97 aa13.63□□□□□ -0.23
GNE-204ENST00000539208 IGHV4-4A0A075B6R2 117 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 IGHV7-4-1A0A0J9YVY3 117 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 LINC01546A6NGU7 62 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 TCF21O43680 179 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 COX6B1P14854 86 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 LOXL1Q08397 574 aaPredicted RBP13.62□□□□□ -0.23
GNE-204ENST00000539208 K7EMT4 169 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 OR10J6PQ8NGY7 276 aa13.62□□□□□ -0.23
GNE-204ENST00000539208 TMEM89A2RUT3 159 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 SMKR1H3BMG3 65 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 DEFB112Q30KQ8 113 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 PRSS57Q6UWY2 283 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 DAZ1Q9NQZ3 744 aaKnown RBP13.61□□□□□ -0.23
GNE-204ENST00000539208 SNAI2O43623 268 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 FOXE3Q13461 319 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 COL5A1-AS1Q5SY13 56 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 RHPN1-AS1Q9BWJ2 59 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 MS4A6AQ9H2W1 248 aa13.61□□□□□ -0.23
GNE-204ENST00000539208 PEF1Q9UBV8 284 aaKnown RBP13.61□□□□□ -0.23
GNE-204ENST00000539208 HSBP1L1C9JCN9 74 aa13.6□□□□□ -0.23
GNE-204ENST00000539208 HBDP02042 147 aa13.6□□□□□ -0.23
GNE-204ENST00000539208 PRB1P04280 392 aa13.6□□□□□ -0.23
GNE-204ENST00000539208 PSMB8P28062 276 aa13.6□□□□□ -0.23
GNE-204ENST00000539208 MAP1LC3AQ9H492 121 aa13.6□□□□□ -0.23
GNE-204ENST00000539208 hDV102S1A0JD36 115 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 NCR2O95944 276 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 IGHV4-59P01825 116 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 CACNG7P62955 275 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 LCNL1Q6ZST4 164 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 SMPXQ9UHP9 88 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 TIMM8BQ9Y5J9 83 aaPredicted RBP13.59□□□□□ -0.23
GNE-204ENST00000539208 ACACBO00763 2458 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 TRBV7-9A0A0J9YWB2 115 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 BATFQ16520 125 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 PRR9Q5T870 116 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 ZFAND2AQ8N6M9 145 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 FAM19A4Q96LR4 140 aa13.59□□□□□ -0.23
GNE-204ENST00000539208 ZFHX3Q15911 3703 aa13.58□□□□□ -0.23
GNE-204ENST00000539208 TM4SF20Q53R12 229 aa13.58□□□□□ -0.24
GNE-204ENST00000539208 BBC3Q96PG8 261 aaPredicted RBP13.58□□□□□ -0.24
GNE-204ENST00000539208 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.58□□□□□ -0.244e-6■■■■□ 23.2
GNE-204ENST00000539208 SPG11Q96JI7 2443 aa13.58□□□□□ -0.24
GNE-204ENST00000539208 TNFRSF6BO95407 300 aa13.58□□□□□ -0.24
GNE-204ENST00000539208 SMIM15Q7Z3B0 74 aa13.58□□□□□ -0.24
GNE-204ENST00000539208 APRG1Q8IVJ8 170 aa13.58□□□□□ -0.24
GNE-204ENST00000539208 NXT2Q9NPJ8 142 aaKnown RBP13.58□□□□□ -0.24
GNE-204ENST00000539208 CELSR1Q9NYQ6 3014 aa13.57□□□□□ -0.24
GNE-204ENST00000539208 TGFAP01135 160 aa13.57□□□□□ -0.24
GNE-204ENST00000539208 SRSF1Q07955 248 aaKnown RBP eCLIP13.57□□□□□ -0.24
GNE-204ENST00000539208 TRAV21A0A0B4J279 112 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 H0Y8G0 127 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 RPL11P62913 178 aaKnown RBP13.56□□□□□ -0.24
GNE-204ENST00000539208 LGALS9BQ3B8N2 356 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 SAMD13Q5VXD3 122 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 LGALS9CQ6DKI2 356 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 Q6ZQT7 251 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 DEFB125Q8N687 156 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 MCRIP2Q9BUT9 160 aaKnown RBP13.56□□□□□ -0.24
GNE-204ENST00000539208 SCRT2Q9NQ03 307 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 PRSS47A8MTI9 375 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 ZNF843Q8N446 348 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 OR8A1Q8NGG7 326 aa13.56□□□□□ -0.24
GNE-204ENST00000539208 FSHBP01225 129 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 TMEM95Q3KNT9 176 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 GAS8-AS1O95177 125 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 EVI2AP22794 236 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 SLC25A34Q6PIV7 304 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 STPG4Q8N801 248 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 DPF1Q92782 380 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 UFC1Q9Y3C8 167 aa13.55□□□□□ -0.24
GNE-204ENST00000539208 CELSR2Q9HCU4 2923 aa13.54□□□□□ -0.24
GNE-204ENST00000539208 SPANXN1Q5VSR9 72 aa13.54□□□□□ -0.24
GNE-204ENST00000539208 IFI27L1Q96BM0 104 aa13.54□□□□□ -0.24
GNE-204ENST00000539208 PMCHL2Q9BQD1 86 aa13.54□□□□□ -0.24
GNE-204ENST00000539208 MYO18BQ8IUG5 2567 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 MED14OSP0DP75 135 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 FCER1GP30273 86 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 Q8N8P6 123 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 OR2K2Q8NGT1 345 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 GOLT1BQ9Y3E0 138 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 USP24Q9UPU5 2620 aa13.53□□□□□ -0.24
GNE-204ENST00000539208 H3BVH4 76 aa13.52□□□□□ -0.24
GNE-204ENST00000539208 ZNF25P17030 456 aaPredicted RBP13.52□□□□□ -0.24
GNE-204ENST00000539208 ID1P41134 155 aa13.52□□□□□ -0.24
GNE-204ENST00000539208 VPREB3Q9UKI3 123 aa13.52□□□□□ -0.24
GNE-204ENST00000539208 UTP20O75691 2785 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms