RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 RGS13O14921 159 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 NUDT3O95989 172 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 MBP02144 154 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 HOXA5P20719 270 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 FAM74A1Q5RGS3 127 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 CMTM2Q8TAZ6 248 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 TMED6Q8WW62 240 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 KLF12Q9Y4X4 402 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 LENEPQ9Y5L5 61 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 MUC4Q99102 2169 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 BORCS7-ASMTA0A0B4J1R7 106 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 GCHFRP30047 84 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 TCL1AP56279 114 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 OR5I1Q13606 314 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 IBA57Q5T440 356 aaKnown RBP10.34□□□□□ -0.75
USP28-204ENST00000537642 GOLT1AQ6ZVE7 132 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 ARL6IP6Q8N6S5 226 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 SUN5Q8TC36 379 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 TMPRSS5Q9H3S3 457 aa10.34□□□□□ -0.75
USP28-204ENST00000537642 IGLV2-18A0A075B6J9 118 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 TRGV1A0A0A0MS02 117 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 SPINK4O60575 86 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 GNG5P63218 68 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 LGALS9BQ3B8N2 356 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 Q6AWC8 147 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 SSX7Q7RTT5 188 aa10.33□□□□□ -0.76
USP28-204ENST00000537642 GNPNAT1Q96EK6 184 aaPredicted RBP10.33□□□□□ -0.76
USP28-204ENST00000537642 ACTR3CQ9C0K3 210 aaPredicted RBP10.33□□□□□ -0.76
USP28-204ENST00000537642 TRAV26-1A0A087WT03 109 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 TRAV8-1A0A0A6YYK1 113 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 SMLR1H3BR10 107 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 MUC21Q5SSG8 566 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 Q6ZR54 194 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 TVP23CQ96ET8 276 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 ST6GAL2Q96JF0 529 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 C18orf15Q96N68 181 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 ARPC5LQ9BPX5 153 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 ATG101Q9BSB4 218 aa10.32□□□□□ -0.76
USP28-204ENST00000537642 TRGV2A0A075B6R0 118 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 A0A0J9YY99 117 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 ARPC5O15511 151 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 CXorf1O96002 111 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 FAM3BP58499 235 aaPredicted RBP10.31□□□□□ -0.76
USP28-204ENST00000537642 ZNF726P1Q15940 193 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 CYTL1Q9NRR1 136 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 TMEM167BQ9NRX6 74 aa10.31□□□□□ -0.76
USP28-204ENST00000537642 ZNF415Q09FC8 603 aa10.3□□□□□ -0.76
USP28-204ENST00000537642 C5orf17Q8NAS9 161 aa10.3□□□□□ -0.76
USP28-204ENST00000537642 MRPL16Q9NX20 251 aaKnown RBP10.3□□□□□ -0.76
USP28-204ENST00000537642 MDFICQ9P1T7 246 aa10.3□□□□□ -0.76
USP28-204ENST00000537642 GGTLC3B5MD39 225 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 F6UZH7 168 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 TAAR5O14804 337 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 RTL8CO15255 209 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 TCRAP04437 139 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 CCL18P55774 89 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 SUMO1P63165 101 aaKnown RBP10.29□□□□□ -0.76
USP28-204ENST00000537642 LINC00336Q6ZUF6 198 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 ZNRF2Q8NHG8 242 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 SGK494Q96LW2 274 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 TREM1Q9NP99 234 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 LINC00588Q9Y4M8 146 aa10.29□□□□□ -0.76
USP28-204ENST00000537642 CTXND1A0A1B0GTU2 59 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 SERTM2A0A1B0GWG4 89 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 H3BNG1 76 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 TMEM183BQ1AE95 376 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 FAM159AQ6UWV7 190 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 IQCF2Q8IXL9 164 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 TMEM183AQ8IXX5 376 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 VSIG2Q96IQ7 327 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 EPDR1Q9UM22 224 aa10.28□□□□□ -0.76
USP28-204ENST00000537642 PKHD1P08F94 4074 aa10.27□□□□□ -0.77
USP28-204ENST00000537642 DYNC1H1Q14204 4646 aaKnown RBP10.27□□□□□ -0.77
USP28-204ENST00000537642 TRAV21A0A0B4J279 112 aa10.27□□□□□ -0.77
USP28-204ENST00000537642 TDRG1Q3Y452 100 aa10.27□□□□□ -0.77
USP28-204ENST00000537642 AKR1C8PQ5T2L2 129 aa10.27□□□□□ -0.77
USP28-204ENST00000537642 NAGKQ9UJ70 344 aa10.27□□□□□ -0.77
USP28-204ENST00000537642 PKD1P98161 4303 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 TRGV11A0A075B6L2 103 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 A0A1W2PRE2 83 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 GNRH2O43555 120 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 IGLV2-11P01706 119 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 IGHV3-53P01767 116 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 FGF8P55075 233 aaPredicted RBP10.26□□□□□ -0.77
USP28-204ENST00000537642 KCNRGQ8N5I3 272 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 OR11H4Q8NGC9 324 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 C8orf49Q96NF6 230 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 PSG8Q9UQ74 426 aa10.26□□□□□ -0.77
USP28-204ENST00000537642 DNAH11Q96DT5 4516 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 IGHV3-16A0A0C4DH30 117 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 K7EQM0 130 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 ZNF80P51504 273 aaPredicted RBP10.25□□□□□ -0.77
USP28-204ENST00000537642 ZNF345Q14585 488 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 ESRGQ1W209 222 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 CYB561D1Q8N8Q1 229 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 TMEM75Q8N9X5 138 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 SPXQ9BT56 116 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 NDFIP1Q9BT67 221 aa10.25□□□□□ -0.77
USP28-204ENST00000537642 A0A096LPF7 62 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 A0A1B0GVY2 172 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms