RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-205	ENST00000535375	TPT1	P13693	172 aa	Known RBP	0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	RPL22	P35268	128 aa	Known RBP	0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	VMA21	Q3ZAQ7	101 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	GLIPR1L1	Q6UWM5	242 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	TEX29	Q8N6K0	151 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375		Q8N6K4	173 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	TMEM229B	Q8NBD8	167 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	CLEC2B	Q92478	149 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	NABP2	Q9BQ15	211 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	HSPB11	Q9Y547	144 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	IGSF10	Q6WRI0	2623 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	DNAH12	Q6ZR08	3092 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	RANBP2	P49792	3224 aa	Known RBP	0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	BIRC6	Q9NR09	4857 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	CASP8AP2	Q9UKL3	1982 aa		0.94	□□□□□ -2.26
PRKDC-205	ENST00000535375	MYO18A	Q92614	2054 aa	Known RBP	0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	IGLV3-1	P01715	115 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	CCL4	P13236	92 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375		Q5XG85	94 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	TMEM35B	Q8NCS4	154 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	ZAN	Q9Y493	2812 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	FLNA	P21333	2647 aa	Known RBP	0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	PTPRF	P10586	1907 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	ANKRD30A	Q9BXX3	1397 aa		0.93	□□□□□ -2.26
PRKDC-205	ENST00000535375	RELN	P78509	3460 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	ZFYVE26	Q68DK2	2539 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	SYNE2	Q8WXH0	6885 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	ABCA13	Q86UQ4	5058 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	MEGF8	Q7Z7M0	2845 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375		A0A096LPI6	279 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375		A0A1B0GX51	115 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	CRYGS	P22914	178 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	LINC00299	Q6ZSB3	139 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	AKAP14	Q86UN6	197 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	OR5AK2	Q8NH90	309 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	WFDC10A	Q9H1F0	79 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	FKBP11	Q9NYL4	201 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	PKD1L1	Q8TDX9	2849 aa		0.92	□□□□□ -2.26
PRKDC-205	ENST00000535375	UNC80	Q8N2C7	3258 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	AHNAK2	Q8IVF2	5795 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	TET1	Q8NFU7	2136 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375		A6NN06	94 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	C5orf58	C9J3I9	102 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375		J3KT08	172 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	SPATA45	Q537H7	98 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	IZUMO2	Q6UXV1	221 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	OR5A2	Q8NGI9	324 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	UBR5	O95071	2799 aa	Predicted RBP	0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	UNC13A	Q9UPW8	1703 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	MED23	Q9ULK4	1368 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	C2CD3	Q4AC94	2353 aa		0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	MACF1	Q9UPN3	7388 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-205	ENST00000535375	FSIP2	Q5CZC0	6907 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	SPTBN5	Q9NRC6	3674 aa	Known RBP	0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	CENPF	P49454	3210 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	AHNAK	Q09666	5890 aa	Known RBP	0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	TENM2	Q9NT68	2774 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	TRAV36DV7	A0A075B6V5	113 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	SLC25A4	P12235	298 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	PDE6G	P18545	87 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	LINC00575	Q6W349	94 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	CASC2	Q6XLA1	102 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	OR51A4	Q8NGJ6	313 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	OR10AC1	Q8NH08	325 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	CIB3	Q96Q77	187 aa	Predicted RBP	0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	LIMD2	Q9BT23	127 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	MPC1	Q9Y5U8	109 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	SETBP1	Q9Y6X0	1596 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	FBN2	P35556	2912 aa		0.9	□□□□□ -2.27
PRKDC-205	ENST00000535375	KDM6B	O15054	1643 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	HERC1	Q15751	4861 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	CNTRL	Q7Z7A1	2325 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	POLQ	O75417	2590 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	MAP1B	P46821	2468 aa	Known RBP	0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	TTC28	Q96AY4	2481 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	USP54	Q70EL1	1684 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	C3orf85	A0A1B0GTC6	90 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	LOC107986453	A0A1B0GWG9	222 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	ARL5C	A6NH57	179 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375		M0QZK8	103 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	IGHV3-30	P01768	117 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	HBD	P02042	147 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	CD14	P08571	375 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	IGHV3-30-5	P0DP03	117 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	BLCAP	P62952	87 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	CCSMST1	Q4G0I0	132 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	BRK1	Q8WUW1	75 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	C19orf12	Q9NSK7	152 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	JPT1	Q9UK76	154 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	LAMA4	Q16363	1823 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	OVOS2	A0A0G2JMS6	1433 aa		0.89	□□□□□ -2.27
PRKDC-205	ENST00000535375	CSMD1	Q96PZ7	3565 aa		0.88	□□□□□ -2.27
PRKDC-205	ENST00000535375	FLNC	Q14315	2725 aa		0.88	□□□□□ -2.27
PRKDC-205	ENST00000535375	FER1L6	Q2WGJ9	1857 aa		0.88	□□□□□ -2.27
PRKDC-205	ENST00000535375	UQCRQ	O14949	82 aa		0.88	□□□□□ -2.27
PRKDC-205	ENST00000535375	DEGS1	O15121	323 aa		0.88	□□□□□ -2.27
PRKDC-205	ENST00000535375	SCT	P09683	121 aa		0.88	□□□□□ -2.27

Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms