RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SRRM4A7MD48 611 aaKnown RBP4.15□□□□□ -1.75
CD44-236ENST00000533222 SMKR1H3BMG3 65 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 LTAP01374 205 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 FRMD6-AS1P0C7T7 363 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 INAFM2P0DMQ5 153 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 APOC4P55056 127 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 HERVK_113P61574 105 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 CACNG7P62955 275 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 RIGQ13278 110 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 KRTAP27-1Q3LI81 207 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 PAPPA-AS1Q5QFB9 102 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 Q6JHZ5 121 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 ARL17AQ8IVW1 177 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 A0A096LNJ9 63 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 IGKV6D-21A0A0A0MT36 114 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 HIGD1CA8MV81 97 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 K7EMI3 77 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 CCL21O00585 134 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 HMGN2P05204 90 aaKnown RBP4.14□□□□□ -1.75
CD44-236ENST00000533222 LMO2P25791 158 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 SAA4P35542 130 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 MYCNOSP40205 109 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 KRTAP10-11P60412 298 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 ECSCRQ19T08 205 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 SP6Q3SY56 376 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 FAM222AQ5U5X8 452 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 ZCCHC24Q8N2G6 241 aaKnown RBP4.14□□□□□ -1.75
CD44-236ENST00000533222 RAB42Q8N4Z0 105 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 Q8N7P7 452 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 Q8N8P6 123 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 PFN4Q8NHR9 129 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 C10orf105Q8TEF2 133 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 PCDH15Q96QU1 1955 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 SMCHD1A6NHR9 2005 aa4.14□□□□□ -1.75
CD44-236ENST00000533222 EML5Q05BV3 1969 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 COL18A1P39060 1754 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 A0A087X002 238 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 TRBV6-6A0A0A6YYG2 114 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 IGKV6-21A0A0C4DH24 114 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 WI2-2373I1.2A0A1W2PRP0 233 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 UBE2L6O14933 153 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 EFNA2O43921 213 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 CCKP06307 115 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 COX6CP09669 75 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 ARL14EPLP0DKL9 152 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 ORMDL2Q53FV1 153 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 S100A7L2Q5SY68 101 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 FHL5Q5TD97 284 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 CEMP1Q6PRD7 247 aaPredicted RBP4.13□□□□□ -1.75
CD44-236ENST00000533222 C9orf139Q6ZV77 190 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 Q8N2B8 174 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 C3orf56Q8N813 242 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 TMEM75Q8N9X5 138 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 SPATA3Q8NHX4 192 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 DCTN5Q9BTE1 182 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 TMEM243Q9BU79 118 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 RPP21Q9H633 154 aaKnown RBP4.13□□□□□ -1.75
CD44-236ENST00000533222 Q9H8V8 135 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 ZNF71Q9NQZ8 489 aaPredicted RBP4.13□□□□□ -1.75
CD44-236ENST00000533222 RBM12B-AS1Q9P1G2 102 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 SELENOKQ9Y6D0 94 aa4.13□□□□□ -1.75
CD44-236ENST00000533222 TRBV7-1A0A0A6YYK4 115 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 TMEM202A6NGA9 273 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 INS-IGF2F8WCM5 200 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 CCL22O00626 93 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 CFC1BP0CG36 223 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 CFC1P0CG37 223 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 FCER1GP30273 86 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 C2orf82Q6UX34 121 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 WDR86Q86TI4 376 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 C9orf106Q8NAJ2 232 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 AGRNO00468 2067 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 ATG2BQ96BY7 2078 aa4.12□□□□□ -1.75
CD44-236ENST00000533222 CACNA1IQ9P0X4 2223 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 PCNX3Q9H6A9 2034 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 IGKV2D-26A0A0A0MRZ7 120 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 TRAV13-2A0A0B4J235 113 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 TEX49A0A1B0GTD5 131 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 H3BVH4 76 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 H7BZZ5 65 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 K7EMT4 169 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 ERC2-IT1O76042 136 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 IGLV3-1P01715 115 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 P0C879 139 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 ZNF883P0CG24 379 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 BRWD1-AS2P59051 145 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 LPAL2Q16609 132 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 Q1T7F1 81 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 KRTAP5-3Q6L8H2 238 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 THAP8Q8NA92 274 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 WFDC11Q8NEX6 87 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 DCANP1Q8TF63 244 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 TSACCQ96A04 125 aaPredicted RBP4.11□□□□□ -1.75
CD44-236ENST00000533222 CYYR1Q96J86 154 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 C6orf106Q9H6K1 298 aaPredicted RBP4.11□□□□□ -1.75
CD44-236ENST00000533222 PHPT1Q9NRX4 125 aaPredicted RBP4.11□□□□□ -1.75
CD44-236ENST00000533222 TAC3Q9UHF0 121 aa4.11□□□□□ -1.75
CD44-236ENST00000533222 IGLV5-52A0A0A0MRZ9 124 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 IGLV1-36A0A0B4J1U3 117 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 A0A1B0GUT8 65 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms