RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TCL1AP56279 114 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 LGALS9BQ3B8N2 356 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 RNF212Q495C1 297 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 TMEM78Q5T7P6 136 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 EIF4E3Q8N5X7 224 aaKnown RBP7.4□□□□□ -1.22
CD44-227ENST00000528086 OR2T35Q8NGX2 323 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 ZNRF2Q8NHG8 242 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 RAB24Q969Q5 203 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 PSMG3Q9BT73 122 aaPredicted RBP7.4□□□□□ -1.22
CD44-227ENST00000528086 OTORQ9NRC9 128 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 MDFICQ9P1T7 246 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 LINC00588Q9Y4M8 146 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 IGHV1OR15-1A0A075B7D0 117 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 TRAV26-1A0A087WT03 109 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 RGS21Q2M5E4 152 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 MUC21Q5SSG8 566 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 Q6AWC8 147 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 PQLC2Q6ZP29 291 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 CCDC28AQ8IWP9 274 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 C15orf53Q8NAA6 179 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 OR11H4Q8NGC9 324 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 HYLS1Q96M11 299 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 C18orf15Q96N68 181 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 KRTAP1-5Q9BYS1 174 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 C11orf21Q9P2W6 132 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 LRP1BQ9NZR2 4599 aa7.39□□□□□ -1.23
CD44-227ENST00000528086 FXYD6-FXYD2A0A087WZ82 144 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 A0A0J9YY99 117 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 GGTLC3B5MD39 225 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 GCHFRP30047 84 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 CDC34P49427 236 aaPredicted RBP7.38□□□□□ -1.23
CD44-227ENST00000528086 ZNF80P51504 273 aaPredicted RBP7.38□□□□□ -1.23
CD44-227ENST00000528086 TAS2R45P59539 299 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 GOLT1AQ6ZVE7 132 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 ASB13Q8WXK3 278 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 SGK494Q96LW2 274 aa7.38□□□□□ -1.23
CD44-227ENST00000528086 MRPL16Q9NX20 251 aaKnown RBP7.38□□□□□ -1.23
CD44-227ENST00000528086 A0A1W2PPV4 95 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 SNURFLB1AK76 121 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 NUDT3O95989 172 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 SERF2P84101 59 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 OR5I1Q13606 314 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 ESRGQ1W209 222 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 IBA57Q5T440 356 aaKnown RBP7.37□□□□□ -1.23
CD44-227ENST00000528086 ARL6IP6Q8N6S5 226 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 ZNF680Q8NEM1 530 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 RXFP4Q8TDU9 374 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 TMED6Q8WW62 240 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 KRTAP3-3Q9BYR6 98 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 KRTAP3-2Q9BYR7 98 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 LENEPQ9Y5L5 61 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 DNAH5Q8TE73 4624 aa7.37□□□□□ -1.23
CD44-227ENST00000528086 A0A096LPF7 62 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 TRGV1A0A0A0MS02 117 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 F6UZH7 168 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 GNRH2O43555 120 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 CSN1S1P47710 185 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 TDRG1Q3Y452 100 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 ZNF575Q86XF7 245 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 ST6GAL2Q96JF0 529 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 LINC00479Q96M42 142 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 C8orf49Q96NF6 230 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 RPH3ALQ9UNE2 315 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 HSPG2P98160 4391 aa7.36□□□□□ -1.23
CD44-227ENST00000528086 RGS13O14921 159 aa7.35□□□□□ -1.23
CD44-227ENST00000528086 IGHV3-53P01767 116 aa7.35□□□□□ -1.23
CD44-227ENST00000528086 TCRAP04437 139 aa7.35□□□□□ -1.23
CD44-227ENST00000528086 FHL2Q14192 279 aa7.35□□□□□ -1.23
CD44-227ENST00000528086 UBE2DNLQ8IWF7 75 aa7.35□□□□□ -1.23
CD44-227ENST00000528086 GNPNAT1Q96EK6 184 aaPredicted RBP7.35□□□□□ -1.23
CD44-227ENST00000528086 IGHV3-16A0A0C4DH30 117 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 H3BNG1 76 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 ARPC5O15511 151 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 FHITP49789 147 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 SUMO1P63165 101 aaKnown RBP7.34□□□□□ -1.23
CD44-227ENST00000528086 TMEM183BQ1AE95 376 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 TMEM183AQ8IXX5 376 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 TMEM75Q8N9X5 138 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 C5orf17Q8NAS9 161 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 INO80EQ8NBZ0 244 aaPredicted RBP7.34□□□□□ -1.23
CD44-227ENST00000528086 KRTAP17-1Q9BYP8 105 aa7.34□□□□□ -1.23
CD44-227ENST00000528086 APOBP04114 4563 aaKnown RBP7.33□□□□□ -1.24
CD44-227ENST00000528086 NBDYA0A0U1RRE5 68 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 PRSS29PA6NIE9 313 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 MBP02144 154 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 TYMSP04818 313 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 SFTA3P0C7M3 94 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 FGF8P55075 233 aaPredicted RBP7.33□□□□□ -1.24
CD44-227ENST00000528086 FAM3BP58499 235 aaPredicted RBP7.33□□□□□ -1.24
CD44-227ENST00000528086 LINC00336Q6ZUF6 198 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 KCNRGQ8N5I3 272 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 RASL10AQ92737 203 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 ZNF479Q96JC4 524 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 ACTR3CQ9C0K3 210 aaPredicted RBP7.33□□□□□ -1.24
CD44-227ENST00000528086 TREM1Q9NP99 234 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 EPDR1Q9UM22 224 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 PSG8Q9UQ74 426 aa7.33□□□□□ -1.24
CD44-227ENST00000528086 TRGV2A0A075B6R0 118 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 TRAV34A0A0B4J273 112 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 CTXND1A0A1B0GTU2 59 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms