RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 AMMECR1LQ6DCA0 310 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 DPF1Q92782 380 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 TRGV3P03979 118 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 ATP5G2Q06055 141 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 TMEM97Q5BJF2 176 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 OR1N2Q8NGR9 330 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 CBY1Q9Y3M2 126 aa9.06□□□□□ -0.96
CD44-209ENST00000433892 C19orf84I3L1E1 186 aa9.05□□□□□ -0.96
CD44-209ENST00000433892 UQCRFS1P47985 274 aa9.05□□□□□ -0.96
CD44-209ENST00000433892 BOD1L2Q8IYS8 172 aa9.05□□□□□ -0.96
CD44-209ENST00000433892 NMUP48645 174 aa9.05□□□□□ -0.96
CD44-209ENST00000433892 CRYBG3Q68DQ2 2970 aa9.05□□□□□ -0.96
CD44-209ENST00000433892 PCP2Q8IVA1 136 aa9.05□□□□□ -0.96
CD44-209ENST00000433892 ABCA2Q9BZC7 2435 aa9.04□□□□□ -0.96
CD44-209ENST00000433892 TRAV41A0A0B4J266 112 aa9.04□□□□□ -0.96
CD44-209ENST00000433892 C7orf71A4D174 169 aa9.04□□□□□ -0.96
CD44-209ENST00000433892 SMAD7O15105 426 aaKnown RBP9.04□□□□□ -0.96
CD44-209ENST00000433892 BRD3OSQ6XYD6 125 aa9.04□□□□□ -0.96
CD44-209ENST00000433892 NXT2Q9NPJ8 142 aaKnown RBP9.04□□□□□ -0.96
CD44-209ENST00000433892 TRAV8-6A0A0B4J262 113 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 TRAV26-2A0A0B4J265 109 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 K7EP13 123 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 FCER1GP30273 86 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 C16orf92Q96LL3 132 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 COL25A1Q9BXS0 654 aaPredicted RBP9.03□□□□□ -0.96
CD44-209ENST00000433892 U3KQE9 123 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 IGHV7-4-1A0A0J9YVY3 117 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 LINC01546A6NGU7 62 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 C9orf47Q6ZRZ4 202 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 ITLN2Q8WWU7 325 aaPredicted RBP9.03□□□□□ -0.96
CD44-209ENST00000433892 NPFFR1Q9GZQ6 430 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 MOB4Q9Y3A3 225 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 UFC1Q9Y3C8 167 aa9.03□□□□□ -0.96
CD44-209ENST00000433892 CFAP46Q8IYW2 2715 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 A1L4Q6 167 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 J3KRW8 73 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 PRSS1P07477 247 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 SEC11AP67812 179 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 OR2K2Q8NGT1 345 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 PIFOQ8TCI5 191 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 TMEM158Q8WZ71 300 aa9.02□□□□□ -0.96
CD44-209ENST00000433892 MRPL53Q96EL3 112 aaKnown RBP9.02□□□□□ -0.96
CD44-209ENST00000433892 TRBV12-3P01733 135 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 IGHV4-39P01824 125 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 IGF1P05019 195 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 ODF1Q14990 250 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 PRR9Q5T870 116 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 UNQ9165/PRO28630Q6UXU0 137 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 C20orf173Q96LM9 149 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 PEF1Q9UBV8 284 aaKnown RBP9.02□□□□□ -0.97
CD44-209ENST00000433892 SPG11Q96JI7 2443 aa9.02□□□□□ -0.97
CD44-209ENST00000433892 ARL3P36405 182 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 RBX1P62877 108 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 SPANXN1Q5VSR9 72 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 SMIM15Q7Z3B0 74 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 Q8N8P6 123 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 GLMPQ8WWB7 406 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 HIF1ANQ9NWT6 349 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 FLNCQ14315 2725 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 CSMD2Q7Z408 3487 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 IGLV2-18A0A075B6J9 118 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 TRAV40A0A0B4J280 105 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 FAM223BA6NKX1 122 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 C19orf54Q5BKX5 351 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 FAM223AQ8IWN6 122 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 OR9G4Q8NGQ1 327 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 HHLA3Q9XRX5 114 aa9.01□□□□□ -0.97
CD44-209ENST00000433892 IGKV2D-26A0A0A0MRZ7 120 aa9□□□□□ -0.97
CD44-209ENST00000433892 IGHV1-69DA0A0B4J2H0 117 aa9□□□□□ -0.97
CD44-209ENST00000433892 H3BVH4 76 aa9□□□□□ -0.97
CD44-209ENST00000433892 IGHV1-69P01742 117 aa9□□□□□ -0.97
CD44-209ENST00000433892 DEFB1P60022 68 aa9□□□□□ -0.97
CD44-209ENST00000433892 ADAMTSL5Q6ZMM2 481 aa9□□□□□ -0.97
CD44-209ENST00000433892 NRACQ8N912 160 aa9□□□□□ -0.97
CD44-209ENST00000433892 FOXC2Q99958 501 aa9□□□□□ -0.97
CD44-209ENST00000433892 UTP20O75691 2785 aaKnown RBP9□□□□□ -0.97
CD44-209ENST00000433892 SPRY2O43597 315 aa9□□□□□ -0.97
CD44-209ENST00000433892 GNLYP22749 145 aa9□□□□□ -0.97
CD44-209ENST00000433892 HSD52Q0P140 79 aa9□□□□□ -0.97
CD44-209ENST00000433892 LY6EQ16553 131 aa9□□□□□ -0.97
CD44-209ENST00000433892 TTTY13Q9BZ97 58 aa9□□□□□ -0.97
CD44-209ENST00000433892 A6NDN8 102 aa8.99□□□□□ -0.97
CD44-209ENST00000433892 SIVA1O15304 175 aa8.99□□□□□ -0.97
CD44-209ENST00000433892 SMIM17P0DL12 118 aa8.99□□□□□ -0.97
CD44-209ENST00000433892 C9orf139Q6ZV77 190 aa8.99□□□□□ -0.97
CD44-209ENST00000433892 GPHB5Q86YW7 130 aa8.99□□□□□ -0.97
CD44-209ENST00000433892 NAA38Q9BRA0 125 aaKnown RBP8.99□□□□□ -0.97
CD44-209ENST00000433892 ZMAT4Q9H898 229 aa8.99□□□□□ -0.97
CD44-209ENST00000433892 IGHV4-61A0A0C4DH41 118 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 IGHV3-11P01762 117 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 IGKCP01834 107 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 KIR3DS1Q14943 382 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 OR4X2Q8NGF9 303 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 TMEM8BA6NDV4 472 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 IGHV4-38-2P0DP08 117 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 RPL11P62913 178 aaKnown RBP8.98□□□□□ -0.97
CD44-209ENST00000433892 LAGE3Q14657 143 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 C21orf62-AS1Q17RA5 79 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 TM4SF20Q53R12 229 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 GTSCR1Q86UQ5 136 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms