RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 H3BUA1 57 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 FAM104BQ5XKR9 115 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 ATRAIDQ6UW56 229 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 Q8N8P6 123 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 WIPF2Q8TF74 440 aaPredicted RBP5.72□□□□□ -1.49
UPF2-203ENST00000397053 RNF183Q96D59 192 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 GFRA4Q9GZZ7 299 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 NDUFA4L2Q9NRX3 87 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 PRSS46E5RG02 174 aa5.71□□□□□ -1.49
UPF2-203ENST00000397053 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.71□□□□□ -1.49
UPF2-203ENST00000397053 SRSF2Q01130 221 aaKnown RBP5.71□□□□□ -1.49
UPF2-203ENST00000397053 RNASE13Q5GAN3 156 aaKnown RBP5.71□□□□□ -1.49
UPF2-203ENST00000397053 PNRC2Q9NPJ4 139 aaKnown RBP5.71□□□□□ -1.49
UPF2-203ENST00000397053 IGHV4-61A0A0C4DH41 118 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 ZNF134P52741 427 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 SRSF3P84103 164 aaKnown RBP5.71□□□□□ -1.5
UPF2-203ENST00000397053 C9orf153Q5TBE3 101 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 KLHDC3Q9BQ90 382 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 COL4A5P29400 1685 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 TRAV4A0A0B4J268 109 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 IGHV2-5P01817 119 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 UTF1Q5T230 341 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 PRSS57Q6UWY2 283 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 APRG1Q8IVJ8 170 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 PRR14LQ5THK1 2151 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 KIAA1551Q9HCM1 1747 aa5.71□□□□□ -1.5
UPF2-203ENST00000397053 IGHV4-28A0A0C4DH34 117 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 FAM231BA6NCW3 169 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 GPHB5Q86YW7 130 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 LINC00311Q8N616 119 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 KLF2Q9Y5W3 355 aaPredicted RBP5.7□□□□□ -1.5
UPF2-203ENST00000397053 TRBV20-1A0A075B6N2 111 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 IGHV4-30-2A0A087WSY4 118 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 TRAV26-2A0A0B4J265 109 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 C5orf47Q569G3 176 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 Q6ZRM9 215 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 BAALCQ8WXS3 180 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 ZNF492Q9P255 531 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 FAM215AQ9Y5M1 114 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 MYO16Q9Y6X6 1858 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 F6UB75 175 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 SPINK8P0C7L1 97 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 FGF6P10767 208 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 ZFP36P26651 326 aaKnown RBP5.7□□□□□ -1.5
UPF2-203ENST00000397053 SLURP1P55000 103 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 FAM120AOSQ5T036 256 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 Q6ZR03 302 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 AMTNQ6UX39 209 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 MRPL36Q9P0J6 103 aaKnown RBP5.7□□□□□ -1.5
UPF2-203ENST00000397053 A0A0G2JRQ6 117 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 FOXE3Q13461 319 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 DEFB135Q30KP9 77 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 DUX4L9Q6RFH8 374 aaPredicted RBP5.7□□□□□ -1.5
UPF2-203ENST00000397053 CRIPAKQ8N1N5 446 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 C8orf31Q8N9H6 132 aa5.7□□□□□ -1.5
UPF2-203ENST00000397053 COL18A1P39060 1754 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 TRACP01848 142 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 CXCL1P09341 107 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 PLA2G2CQ5R387 149 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 Q6ZS49 121 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 ZNF833PQ6ZTB9 187 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 RNF144BQ7Z419 303 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 NCOR1P1Q9H4R4 102 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 LAMA4Q16363 1823 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 COX7A2LO14548 114 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 SIGLEC8Q9NYZ4 499 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 LRCOL1A6NCL2 159 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 GRNP28799 593 aaKnown RBP5.69□□□□□ -1.5
UPF2-203ENST00000397053 ZNF124Q15973 351 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 HIST2H2BCQ6DN03 193 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 SLC25A29Q8N8R3 303 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 C16orf74Q96GX8 76 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 GTSF1LQ9H1H1 148 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 J3QQQ9 107 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 SCN5AQ14524 2016 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 OR11H6Q8NGC7 330 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 ZNF581Q9P0T4 197 aa5.69□□□□□ -1.5
UPF2-203ENST00000397053 DOCK11Q5JSL3 2073 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 CFPP27918 469 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 WT1-ASQ06250 92 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 GFI1Q99684 422 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 DOCK5Q9H7D0 1870 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 UBE2CO00762 179 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 BTCP35070 178 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 TMEM258P61165 79 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 TPSG1Q9NRR2 321 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 KAAG1Q9UBP8 84 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.68□□□□□ -1.5
UPF2-203ENST00000397053 IGKV2-29A2NJV5 120 aaPredicted RBP5.68□□□□□ -1.5
UPF2-203ENST00000397053 H3BRN7 92 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 NDUFA1O15239 70 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 MRPL51Q4U2R6 128 aaKnown RBP5.68□□□□□ -1.5
UPF2-203ENST00000397053 Q9H8V8 135 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 MYO5AQ9Y4I1 1855 aaKnown RBP5.68□□□□□ -1.5
UPF2-203ENST00000397053 TCF20Q9UGU0 1960 aaKnown RBP5.68□□□□□ -1.5
UPF2-203ENST00000397053 MYCNOSP40205 109 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 ADAMTSL5Q6ZMM2 481 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 HIST3H2BBQ8N257 126 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 NRGNQ92686 78 aa5.68□□□□□ -1.5
UPF2-203ENST00000397053 CHD3Q12873 2000 aaKnown RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms