RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ETDBQ3ZM63 59 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 CEND1Q8N111 149 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 LINC00311Q8N616 119 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 C8orf46Q8TAG6 207 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 ZNF502Q8TBZ5 544 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 DKK2Q9UBU2 259 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 WI2-2373I1.2A0A1W2PRP0 233 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 CNIH1O95406 144 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 DLX1P56177 255 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 C8orf86Q6ZUL3 223 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 IGKV2D-26A0A0A0MRZ7 120 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 K7ERJ3 54 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 PRB3Q04118 309 aaPredicted RBP8.72□□□□□ -1.01
CUX1-204ENST00000393824 ATP5G2Q06055 141 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 GOLT1AQ6ZVE7 132 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 SH2D6Q7Z4S9 175 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 TMEM14CQ9P0S9 112 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 CYSLTR1Q9Y271 337 aa8.72□□□□□ -1.01
CUX1-204ENST00000393824 TRBV25-1A0A075B6N4 114 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 H3BTX0 84 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 HLA-DRB4P13762 266 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 EFNA4P52798 201 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 VMA21Q3ZAQ7 101 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 ZNF562Q6V9R5 426 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 Q71RC1 249 aaPredicted RBP8.71□□□□□ -1.01
CUX1-204ENST00000393824 TMEM75Q8N9X5 138 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 NHP2Q9NX24 153 aaKnown RBP8.71□□□□□ -1.01
CUX1-204ENST00000393824 PRO0461Q9UI25 63 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 HLA-DRB4X5D2U9 266 aa8.71□□□□□ -1.01
CUX1-204ENST00000393824 TLN2Q9Y4G6 2542 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 IGLV2-23P01705 113 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 EVI2AP22794 236 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 ARL3P36405 182 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 RPL32P62910 135 aaKnown RBP8.71□□□□□ -1.02
CUX1-204ENST00000393824 TAL2Q16559 108 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 TTC9CQ8N5M4 171 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 ARPC1AQ92747 370 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 BPESC1Q9GZL8 116 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 CREBBPQ92793 2442 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 ITPR3Q14573 2671 aa8.71□□□□□ -1.02
CUX1-204ENST00000393824 H3BMG7 143 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 SPINK8P0C7L1 97 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 CRIP1P50238 77 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 GAGE13Q4V321 117 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 RUSC1-AS1Q66K80 236 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 SMIM20Q8N5G0 67 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 CSPG4Q6UVK1 2322 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 LINC01546A6NGU7 62 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 B5MCH6 92 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 CCL3L1P16619 93 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 FXYD7P58549 80 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 MRPL51Q4U2R6 128 aaKnown RBP8.7□□□□□ -1.02
CUX1-204ENST00000393824 AMN1Q8IY45 258 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 RAX2Q96IS3 184 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 ZNRD1Q9P1U0 126 aa8.7□□□□□ -1.02
CUX1-204ENST00000393824 PRRC2AP48634 2157 aaKnown RBP8.69□□□□□ -1.02
CUX1-204ENST00000393824 LINC01559Q495D7 138 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 C10orf55Q5SWW7 151 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 EXOC3-AS1Q8N2X6 119 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 ATP5J2P56134 94 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 C12orf74Q32Q52 190 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 LCNL1Q6ZST4 164 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 ANAPC13Q9BS18 74 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 KAAG1Q9UBP8 84 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 HIGD1AQ9Y241 93 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 UFC1Q9Y3C8 167 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 TEX15Q9BXT5 2789 aa8.69□□□□□ -1.02
CUX1-204ENST00000393824 ACANP16112 2415 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 A0A1W2PPI3 338 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 NPIPB5A8MRT5 1133 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 TMEM200BQ69YZ2 307 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 LYZL1Q6UWQ5 148 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 TTTY13Q9BZ97 58 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 NAV3Q8IVL0 2385 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 FLNAP21333 2647 aaKnown RBP8.68□□□□□ -1.02
CUX1-204ENST00000393824 IGHV4-30-2A0A087WSY4 118 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 TMEM213A2RRL7 107 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 NPYP01303 97 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 IGKCP01834 107 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 ZFP36P26651 326 aaKnown RBP8.68□□□□□ -1.02
CUX1-204ENST00000393824 INSL3P51460 131 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 KLF17Q5JT82 389 aaPredicted RBP8.68□□□□□ -1.02
CUX1-204ENST00000393824 ATP6V0E2Q8NHE4 81 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 TPPP3Q9BW30 176 aa8.68□□□□□ -1.02
CUX1-204ENST00000393824 SETXQ7Z333 2677 aaKnown RBP8.67□□□□□ -1.02
CUX1-204ENST00000393824 OTOGQ6ZRI0 2925 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 MYO9AB2RTY4 2548 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 NDUFB3O43676 98 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 CKS2P33552 79 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 LYPD1Q8N2G4 141 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 SPXQ9BT56 116 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 SLC25A39Q9BZJ4 359 aaPredicted RBP8.67□□□□□ -1.02
CUX1-204ENST00000393824 YAE1D1Q9NRH1 226 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 CUBNO60494 3623 aa8.67□□□□□ -1.02
CUX1-204ENST00000393824 FCER1GP30273 86 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 FOXI1Q12951 378 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 KLRD1Q13241 179 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 RRN3P1Q2M238 152 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 MRGPRG-AS1Q2M3A8 158 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 C20orf78Q9BR46 151 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms