RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NCOR2Q9Y618 2525 aa14.27□□□□□ -0.12
CCDC3-201ENST00000378825 IGHV3-49A0A0A0MS15 119 aa14.27□□□□□ -0.12
CCDC3-201ENST00000378825 C5orf64Q2M2E5 130 aa14.27□□□□□ -0.12
CCDC3-201ENST00000378825 RPL7P18124 248 aaKnown RBP14.27□□□□□ -0.13
CCDC3-201ENST00000378825 EFNA4P52798 201 aa14.27□□□□□ -0.13
CCDC3-201ENST00000378825 BMI1P35226 326 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 COX8CQ7Z4L0 72 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 SH2D6Q7Z4S9 175 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 DPM3Q9P2X0 92 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 IGKV3D-20A0A0C4DH25 116 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 B9A039 149 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 VKORC1Q9BQB6 163 aa14.26□□□□□ -0.13
CCDC3-201ENST00000378825 SMIM17P0DL12 118 aa14.25□□□□□ -0.13
CCDC3-201ENST00000378825 ARPC1AQ92747 370 aa14.25□□□□□ -0.13
CCDC3-201ENST00000378825 SRSF8Q9BRL6 282 aaKnown RBP14.25□□□□□ -0.13
CCDC3-201ENST00000378825 H3BMG7 143 aa14.25□□□□□ -0.13
CCDC3-201ENST00000378825 CEND1Q8N111 149 aa14.25□□□□□ -0.13
CCDC3-201ENST00000378825 IGLV2-18A0A075B6J9 118 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 FABP5P3A8MUU1 101 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 NDUFA3O95167 84 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 TMEM11P17152 192 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 SMAGPQ0VAQ4 97 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 RNF5Q99942 180 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 DPM2O94777 84 aa14.24□□□□□ -0.13
CCDC3-201ENST00000378825 AZU1P20160 251 aa14.23□□□□□ -0.13
CCDC3-201ENST00000378825 HIGD1BQ9P298 99 aa14.23□□□□□ -0.13
CCDC3-201ENST00000378825 UFC1Q9Y3C8 167 aa14.23□□□□□ -0.13
CCDC3-201ENST00000378825 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.23□□□□□ -0.13
CCDC3-201ENST00000378825 ZNF672Q499Z4 452 aaPredicted RBP14.23□□□□□ -0.13
CCDC3-201ENST00000378825 NPBQ8NG41 125 aa14.23□□□□□ -0.13
CCDC3-201ENST00000378825 CNFNQ9BYD5 112 aa14.23□□□□□ -0.13
CCDC3-201ENST00000378825 NXT2Q9NPJ8 142 aaKnown RBP14.23□□□□□ -0.13
CCDC3-201ENST00000378825 COL12A1Q99715 3063 aa14.23□□□□□ -0.13
CCDC3-201ENST00000378825 CCL21O00585 134 aa14.22□□□□□ -0.13
CCDC3-201ENST00000378825 SAMD13Q5VXD3 122 aa14.22□□□□□ -0.13
CCDC3-201ENST00000378825 TSSC4Q9Y5U2 329 aaPredicted RBP14.22□□□□□ -0.13
CCDC3-201ENST00000378825 PIFOQ8TCI5 191 aa14.22□□□□□ -0.13
CCDC3-201ENST00000378825 KLK15Q9H2R5 256 aa14.22□□□□□ -0.13
CCDC3-201ENST00000378825 LINC01546A6NGU7 62 aa14.21□□□□□ -0.13
CCDC3-201ENST00000378825 IGLL5B9A064 214 aa14.21□□□□□ -0.13
CCDC3-201ENST00000378825 INSL3P51460 131 aa14.21□□□□□ -0.13
CCDC3-201ENST00000378825 ETDBQ3ZM63 59 aa14.21□□□□□ -0.13
CCDC3-201ENST00000378825 TM2D2Q9BX73 214 aa14.21□□□□□ -0.13
CCDC3-201ENST00000378825 Q8N8P6 123 aa14.21□□□□□ -0.14
CCDC3-201ENST00000378825 NRACQ8N912 160 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 AGPAT4-IT1Q9H0P7 198 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 RAXQ9Y2V3 346 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 VPS13CQ709C8 3753 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 E9PLD3 99 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 J3KRW8 73 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 ZNF479Q96JC4 524 aa14.2□□□□□ -0.14
CCDC3-201ENST00000378825 SPANXB1Q9NS25 103 aaPredicted RBP14.2□□□□□ -0.14
CCDC3-201ENST00000378825 LINC01559Q495D7 138 aa14.19□□□□□ -0.14
CCDC3-201ENST00000378825 CLEC2AQ6UVW9 174 aa14.19□□□□□ -0.14
CCDC3-201ENST00000378825 TTC9CQ8N5M4 171 aa14.19□□□□□ -0.14
CCDC3-201ENST00000378825 SPTAN1Q13813 2472 aaKnown RBP14.19□□□□□ -0.14
CCDC3-201ENST00000378825 C12orf74Q32Q52 190 aa14.19□□□□□ -0.14
CCDC3-201ENST00000378825 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.18□□□□□ -0.14
CCDC3-201ENST00000378825 LY6G5BQ8NDX9 201 aa14.18□□□□□ -0.14
CCDC3-201ENST00000378825 OR11H6Q8NGC7 330 aa14.18□□□□□ -0.14
CCDC3-201ENST00000378825 IGHV7-4-1A0A0J9YVY3 117 aa14.18□□□□□ -0.14
CCDC3-201ENST00000378825 FOXI2Q6ZQN5 318 aa14.18□□□□□ -0.14
CCDC3-201ENST00000378825 DEFB104AQ8WTQ1 72 aa14.18□□□□□ -0.14
CCDC3-201ENST00000378825 IGF1P05019 195 aa14.17□□□□□ -0.14
CCDC3-201ENST00000378825 ZNF48Q96MX3 618 aaPredicted RBP14.17□□□□□ -0.14
CCDC3-201ENST00000378825 CLEC3BP05452 202 aa14.17□□□□□ -0.14
CCDC3-201ENST00000378825 ECSCRQ19T08 205 aa14.17□□□□□ -0.14
CCDC3-201ENST00000378825 C15orf32Q32M92 178 aa14.17□□□□□ -0.14
CCDC3-201ENST00000378825 S100A7AQ86SG5 101 aa14.17□□□□□ -0.14
CCDC3-201ENST00000378825 HIST1H4GQ99525 98 aa14.17□□□□□ -0.14
CCDC3-201ENST00000378825 IGHV7-81A0A0B4J1V7 117 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 ATP5LO75964 103 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 SFTA2Q6UW10 78 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 TMEM190Q8WZ59 177 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 SPAG8Q99932 426 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-201ENST00000378825 BUB3O43684 328 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 LAGE3Q14657 143 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 MYOZ3Q8TDC0 251 aa14.16□□□□□ -0.14
CCDC3-201ENST00000378825 DEFB1P60022 68 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 MSRB2Q9Y3D2 182 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 LINC01548A6NM66 108 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 ODF3BA8MYP8 253 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 CEACAM3P40198 252 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 PRR9Q5T870 116 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 ZFAND3Q9H8U3 227 aa14.15□□□□□ -0.14
CCDC3-201ENST00000378825 MAP1AP78559 2803 aaPredicted RBP14.15□□□□□ -0.14
CCDC3-201ENST00000378825 CLPSL1A2RUU4 121 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 GAGE12HA6NDE8 117 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 H3BVH4 76 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 ATP5G2Q06055 141 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 A0A087WX48 190 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 TRAV8-2A0A0B4J237 113 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 ADORA2A-AS1P86434 159 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 VMO1Q7Z5L0 202 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 SIGMAR1Q99720 223 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 CYSLTR1Q9Y271 337 aa14.14□□□□□ -0.15
CCDC3-201ENST00000378825 G3V318 75 aa14.13□□□□□ -0.15
CCDC3-201ENST00000378825 CLEC19AQ6UXS0 136 aa14.13□□□□□ -0.15
CCDC3-201ENST00000378825 SRSF2Q01130 221 aaKnown RBP14.13□□□□□ -0.15
CCDC3-201ENST00000378825 SPANXN1Q5VSR9 72 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms