RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CARD19Q96LW7 228 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 MYH13Q9UKX3 1938 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 PRRC2AP48634 2157 aaKnown RBP3.19□□□□□ -1.9
USH2A-202ENST00000366942 PRR14LQ5THK1 2151 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 MALRD1Q5VYJ5 2156 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 H3BTX0 84 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 RPL29P47914 159 aaKnown RBP3.19□□□□□ -1.9
USH2A-202ENST00000366942 SPAG11BQ08648 103 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 MORN5Q5VZ52 161 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 HIGD2AQ9BW72 106 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 BAZ2AQ9UIF9 1905 aaKnown RBP3.19□□□□□ -1.9
USH2A-202ENST00000366942 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.19□□□□□ -1.9
USH2A-202ENST00000366942 K7EQD1 137 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 GCHFRP30047 84 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 LMO4P61968 165 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 BLCAPP62952 87 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 EWSR1Q01844 656 aaKnown RBP eCLIP3.19□□□□□ -1.9
USH2A-202ENST00000366942 Q6ZSN1 163 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 ZNF491Q8N8L2 437 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 PPP1R1CQ8WVI7 109 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 TNFRSF12AQ9NP84 129 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 TRAV26-1A0A087WT03 109 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 TRBV6-7A0A0A0MS04 114 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1-12A0A0C4DH73 117 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 A0A1W2PRE2 83 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 NCR2O95944 276 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 ATXN8Q156A1 80 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 STPG4Q8N801 248 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 SCRT2Q9NQ03 307 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 MYH6P13533 1939 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 HEATR1Q9H583 2144 aaKnown RBP3.18□□□□□ -1.9
USH2A-202ENST00000366942 MDC1Q14676 2089 aaKnown RBP3.18□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1D-13A0A0B4J2D9 117 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1-13P0DP09 117 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 ZNF506Q5JVG8 444 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 KPRPQ5T749 579 aaPredicted RBP3.18□□□□□ -1.9
USH2A-202ENST00000366942 LINC00299Q6ZSB3 139 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 POLQO75417 2590 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 C9orf170A2RU37 121 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 GZMMP51124 257 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 B3GALT5-AS1P59052 145 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 UBE2V2Q15819 145 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 CDIP1Q9H305 208 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 PIKFYVEQ9Y2I7 2098 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 THSD7BQ9C0I4 1608 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 TRBV9A0A0B4J1U6 114 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 MEF2BQ02080 365 aaPredicted RBP3.18□□□□□ -1.9
USH2A-202ENST00000366942 PPP1R3EQ9H7J1 279 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 MYH4Q9Y623 1939 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 A0A0J9YWU9 116 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 CDC42EP2O14613 210 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 DKK1O94907 266 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 SYCNQ0VAF6 134 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 PRR4Q16378 134 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 WFDC6Q9BQY6 131 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 GSN-AS1Q9NRJ2 163 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 LSM4Q9Y4Z0 139 aaKnown RBP3.18□□□□□ -1.9
USH2A-202ENST00000366942 BRWD3Q6RI45 1802 aa3.18□□□□□ -1.9
USH2A-202ENST00000366942 P0C879 139 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 EGR2P11161 476 aaPredicted RBP3.17□□□□□ -1.9
USH2A-202ENST00000366942 CTAG1AP78358 180 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 PAX2Q02962 417 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 ZNF414Q96IQ9 312 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 LAMTOR2Q9Y2Q5 125 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 FER1L5A0AVI2 2057 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 VIRMAQ69YN4 1812 aaKnown RBP3.17□□□□□ -1.9
USH2A-202ENST00000366942 IGHV3-16A0A0C4DH30 117 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 FAM19A1Q7Z5A9 133 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 PMCHL2Q9BQD1 86 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 TIMM21Q9BVV7 248 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 TM2D1Q9BX74 207 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 TRAV8-2A0A0B4J237 113 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 LEPROTL1O95214 131 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 MPZP25189 248 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 APRG1Q8IVJ8 170 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 ANKRD29Q8N6D5 301 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 VSIG2Q96IQ7 327 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 SHANK2-AS3Q9BTD1 123 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 GTSF1LQ9H1H1 148 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 PLXNA1Q9UIW2 1896 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1D-17A0A075B6S4 117 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 hADV29S1A0JD25 119 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 BCL2L11O43521 198 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 TCRAP04437 139 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 UFSP1Q6NVU6 142 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 PCP2Q8IVA1 136 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 Q8N1Y9 231 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 C5orf56Q8N8D9 126 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 KLHDC2Q9Y2U9 406 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 POLR2AP24928 1970 aaKnown RBP3.17□□□□□ -1.9
USH2A-202ENST00000366942 FNDC10F2Z333 226 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 SNRPCP09234 159 aaKnown RBP3.17□□□□□ -1.9
USH2A-202ENST00000366942 CRYBB3P26998 211 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 KIAA0087Q14695 138 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 TMEM95Q3KNT9 176 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 ZNF492Q9P255 531 aa3.17□□□□□ -1.9
USH2A-202ENST00000366942 DEFB4AO15263 64 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 PFN2P35080 140 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 XGP55808 180 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 KRTAP24-1Q3LI83 254 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms