RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 CDKN1BP46527 198 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 XCL2Q9UBD3 114 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 PFN2P35080 140 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 SRSF2Q01130 221 aaKnown RBP11.8□□□□□ -0.52
CHD4-201ENST00000357008 SPTAN1Q13813 2472 aaKnown RBP11.8□□□□□ -0.52
CHD4-201ENST00000357008 Q8NFD4 153 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 AZU1P20160 251 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 GATA3P23771 443 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 RUSC1-AS1Q66K80 236 aa11.8□□□□□ -0.52
CHD4-201ENST00000357008 CARD19Q96LW7 228 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 IGHV3-16A0A0C4DH30 117 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 IGLV1-44P01699 117 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 GNLYP22749 145 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 CDPF1Q6NVV7 123 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 IGHV1-69DA0A0B4J2H0 117 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 IGHV1-69P01742 117 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 IGLV3-9A0A075B6K5 115 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 AMTNQ6UX39 209 aa11.79□□□□□ -0.52
CHD4-201ENST00000357008 TRPM7Q96QT4 1865 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 HEATR5AQ86XA9 2040 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 DEFB125Q8N687 156 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 TMEM243Q9BU79 118 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 MSMBP08118 114 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 ASPHD1Q5U4P2 390 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 ZNRF2Q8NHG8 242 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 CREBBPQ92793 2442 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 ZNF491Q8N8L2 437 aa11.78□□□□□ -0.52
CHD4-201ENST00000357008 DOCK8Q8NF50 2099 aa11.77□□□□□ -0.52
CHD4-201ENST00000357008 TRAV13-2A0A0B4J235 113 aa11.77□□□□□ -0.52
CHD4-201ENST00000357008 K7EMI3 77 aa11.77□□□□□ -0.53
CHD4-201ENST00000357008 UBE2DNLQ8IWF7 75 aa11.77□□□□□ -0.53
CHD4-201ENST00000357008 FAM120AOSQ5T036 256 aa11.77□□□□□ -0.53
CHD4-201ENST00000357008 IGHV2-70DA0A0C4DH43 119 aa11.77□□□□□ -0.53
CHD4-201ENST00000357008 RBMY1FQ15415 496 aaKnown RBP11.77□□□□□ -0.53
CHD4-201ENST00000357008 LINC01619G3V211 115 aa11.76□□□□□ -0.53
CHD4-201ENST00000357008 ZNF493Q6ZR52 646 aa11.76□□□□□ -0.53
CHD4-201ENST00000357008 HERVK_113P63121 156 aa11.76□□□□□ -0.53
CHD4-201ENST00000357008 HAMPP81172 84 aa11.76□□□□□ -0.53
CHD4-201ENST00000357008 DIDO1Q9BTC0 2240 aaKnown RBP11.76□□□□□ -0.53
CHD4-201ENST00000357008 TRAV12-2A0A075B6T6 113 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 ZNF561-AS1K7EIQ3 104 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 NOTCH3Q9UM47 2321 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 CCL25O15444 150 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 CEACAM8P31997 349 aaPredicted RBP11.75□□□□□ -0.53
CHD4-201ENST00000357008 TRACP01848 142 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 RNF114Q9Y508 228 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 DOCK7Q96N67 2140 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 IGHV3-38A0A0C4DH36 116 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 PRSS29PA6NIE9 313 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 DIAPH2-AS1Q14236 149 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 NTN5Q8WTR8 489 aaPredicted RBP11.75□□□□□ -0.53
CHD4-201ENST00000357008 ZNF407Q9C0G0 2248 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 ANKRD29Q8N6D5 301 aa11.75□□□□□ -0.53
CHD4-201ENST00000357008 CACNA1BQ00975 2339 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 CFC1BP0CG36 223 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 CFC1P0CG37 223 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 GAGE7O76087 117 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 GAGE12FP0CL80 117 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 GAGE12GP0CL81 117 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 GAGE12IP0CL82 117 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 C8orf31Q8N9H6 132 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 KAAG1Q9UBP8 84 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 COL6A6A6NMZ7 2263 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 USF3Q68DE3 2245 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 PSCAO43653 123 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 IGHG4P01861 327 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 PCP2Q8IVA1 136 aa11.74□□□□□ -0.53
CHD4-201ENST00000357008 CACNA1HO95180 2353 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 EGR2P11161 476 aaPredicted RBP11.73□□□□□ -0.53
CHD4-201ENST00000357008 TCTEX1D4Q5JR98 221 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 CFHR3Q02985 330 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 RIF1Q5UIP0 2472 aaKnown RBP11.73□□□□□ -0.53
CHD4-201ENST00000357008 PLXNA4Q9HCM2 1894 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 RPL32P62910 135 aaKnown RBP11.73□□□□□ -0.53
CHD4-201ENST00000357008 IGFL3Q6UXB1 125 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 C17orf77Q96MU5 243 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 C15orf53Q8NAA6 179 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 Q6ZVH6 145 aa11.73□□□□□ -0.53
CHD4-201ENST00000357008 LY6G6EA0A0G2JKS1 128 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 IGHV7-4-1A0A0J9YVY3 117 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 CRLF1O75462 422 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 NXPH4O95158 308 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 RHOHQ15669 191 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 U3KQA8 63 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 GAGE6Q13070 117 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 SCRT2Q9NQ03 307 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 LENEPQ9Y5L5 61 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 MRPL53Q96EL3 112 aaKnown RBP11.72□□□□□ -0.53
CHD4-201ENST00000357008 RBAKDNA6NC62 111 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 CITED1Q99966 193 aa11.72□□□□□ -0.53
CHD4-201ENST00000357008 MYLKQ15746 1914 aa11.71□□□□□ -0.53
CHD4-201ENST00000357008 DYNAPQ8N1N2 210 aa11.71□□□□□ -0.53
CHD4-201ENST00000357008 SPANXCQ9NY87 97 aa11.71□□□□□ -0.53
CHD4-201ENST00000357008 DSCR8Q96T75 97 aa11.71□□□□□ -0.53
CHD4-201ENST00000357008 AGPAT4-IT1Q9H0P7 198 aa11.71□□□□□ -0.53
CHD4-201ENST00000357008 DAD1P61803 113 aa11.71□□□□□ -0.54
CHD4-201ENST00000357008 TMEM126AQ9H061 195 aa11.7□□□□□ -0.54
CHD4-201ENST00000357008 F5H768 121 aa11.7□□□□□ -0.54
CHD4-201ENST00000357008 NUPR1O60356 82 aa11.7□□□□□ -0.54
CHD4-201ENST00000357008 SUMO4Q6EEV6 95 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms