RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZNF688P0C7X2 276 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 FOSL1P15407 271 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 HBBP68871 147 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 RAX2Q96IS3 184 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 LINC00477Q96M19 166 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 PPP1R14DQ9NXH3 145 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 RNF114Q9Y508 228 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 NDUFA7O95182 113 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 ORM1P02763 201 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 FOXA3P55318 350 aaPredicted RBP10.07□□□□□ -0.8
HMGB1-202ENST00000339872 PDZD11Q5EBL8 140 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 GDF5OSQ5U4N7 250 aa10.07□□□□□ -0.8
HMGB1-202ENST00000339872 TSSC4Q9Y5U2 329 aaPredicted RBP10.07□□□□□ -0.8
HMGB1-202ENST00000339872 K7EQG2 157 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 KIAA1644Q3SXP7 199 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 PSMG4Q5JS54 123 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 LENEPQ9Y5L5 61 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 GRIFINA4D1Z8 144 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 J3KRW8 73 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 TCF21O43680 179 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 SNRPD3P62318 126 aaKnown RBP10.06□□□□□ -0.8
HMGB1-202ENST00000339872 SRSF2Q01130 221 aaKnown RBP10.06□□□□□ -0.8
HMGB1-202ENST00000339872 SLAQ13239 276 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 Q6AWC8 147 aa10.06□□□□□ -0.8
HMGB1-202ENST00000339872 SSBP4Q9BWG4 385 aaPredicted RBP10.06□□□□□ -0.8
HMGB1-202ENST00000339872 APCSP02743 223 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 ARMS2P0C7Q2 107 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 RPS20P60866 119 aaKnown RBP10.05□□□□□ -0.8
HMGB1-202ENST00000339872 PRR31Q5SQ13 230 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 HIST3H2BBQ8N257 126 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 A0A1B0GUT8 65 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 CCL24O00175 119 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 PAFAH1B2P68402 229 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 FHL3Q13643 280 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 PRR9Q5T870 116 aa10.05□□□□□ -0.8
HMGB1-202ENST00000339872 CSN3P07498 182 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 CRISP2P16562 243 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 LINC01559Q495D7 138 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 DYNLRB2Q8TF09 96 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 BORCS7Q96B45 105 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 A0A1B0GUS0 222 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 IFITM10A6NMD0 228 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 PROK1P58294 105 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 COA6Q5JTJ3 125 aaKnown RBP10.04□□□□□ -0.8
HMGB1-202ENST00000339872 LYZL1Q6UWQ5 148 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 ZFAND2AQ8N6M9 145 aa10.04□□□□□ -0.8
HMGB1-202ENST00000339872 CD33P20138 364 aa10.03□□□□□ -0.8
HMGB1-202ENST00000339872 S100A2P29034 98 aa10.03□□□□□ -0.8
HMGB1-202ENST00000339872 RIGQ13278 110 aa10.03□□□□□ -0.8
HMGB1-202ENST00000339872 Q6ZQT7 251 aa10.03□□□□□ -0.8
HMGB1-202ENST00000339872 FER1L6-AS1Q8NA97 138 aa10.03□□□□□ -0.8
HMGB1-202ENST00000339872 C11orf21Q9P2W6 132 aa10.03□□□□□ -0.8
HMGB1-202ENST00000339872 SRIP30626 198 aa10.02□□□□□ -0.8
HMGB1-202ENST00000339872 SSTP61278 116 aa10.02□□□□□ -0.8
HMGB1-202ENST00000339872 TMEM61Q8N0U2 210 aa10.02□□□□□ -0.8
HMGB1-202ENST00000339872 FAM19A4Q96LR4 140 aa10.02□□□□□ -0.8
HMGB1-202ENST00000339872 IGKV3D-20A0A0C4DH25 116 aa10.02□□□□□ -0.81
HMGB1-202ENST00000339872 GPX1P07203 203 aa10.02□□□□□ -0.81
HMGB1-202ENST00000339872 ZNF575Q86XF7 245 aa10.02□□□□□ -0.81
HMGB1-202ENST00000339872 HIVEP1P15822 2718 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 MUC21A0A0G2JKD1 596 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 MUC21A0A140T8X8 626 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 IGLC6P0CF74 106 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 MUC21Q5SSG8 566 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 NSD1Q96L73 2696 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-202ENST00000339872 A0A0J9YX75 114 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 CRLF1O75462 422 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 FABP4P15090 132 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 CTRLP40313 264 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 KIR3DS1Q14943 382 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 TMEM256Q8N2U0 113 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 NAGKQ9UJ70 344 aa10.01□□□□□ -0.81
HMGB1-202ENST00000339872 TRBV7-9A0A0J9YWB2 115 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 S100A8P05109 93 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 RNASE4P34096 147 aaKnown RBP10□□□□□ -0.81
HMGB1-202ENST00000339872 NSUN5P1Q3KNT7 163 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 EBLN2Q6P2I7 272 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 FN1P02751 2386 aaKnown RBP10□□□□□ -0.81
HMGB1-202ENST00000339872 TRAV21A0A0B4J279 112 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 A0A1B0GW15 77 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 F2Z2F3 143 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 IGKV3-20P01619 116 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 DEFB114Q30KQ6 69 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 BAGE3Q86Y29 109 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 TP53TG3Q9ULZ0 132 aa10□□□□□ -0.81
HMGB1-202ENST00000339872 CD300EQ496F6 205 aaPredicted RBP9.99□□□□□ -0.81
HMGB1-202ENST00000339872 APRG1Q8IVJ8 170 aa9.99□□□□□ -0.81
HMGB1-202ENST00000339872 HIST1H2BLQ99880 126 aa9.99□□□□□ -0.81
HMGB1-202ENST00000339872 SETXQ7Z333 2677 aaKnown RBP9.99□□□□□ -0.81
HMGB1-202ENST00000339872 SETD2Q9BYW2 2564 aaPredicted RBP9.99□□□□□ -0.81
HMGB1-202ENST00000339872 ADARB2-AS1A8MUL3 147 aa9.99□□□□□ -0.81
HMGB1-202ENST00000339872 Q0VG73 95 aa9.99□□□□□ -0.81
HMGB1-202ENST00000339872 WNK1Q9H4A3 2382 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 TRAV2A0A0B4J234 112 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 KLLNB2CW77 178 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 SERF1AO75920 110 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 TWIST1Q15672 202 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 OR10J3Q5JRS4 329 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 FOXI2Q6ZQN5 318 aa9.98□□□□□ -0.81
HMGB1-202ENST00000339872 NUPR1O60356 82 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms