RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 ZNF292O60281 2723 aa14.7□□□□□ -0.06
RTN4-201ENST00000317610 CLPSL1A2RUU4 121 aa14.7□□□□□ -0.06
RTN4-201ENST00000317610 SRSF1Q07955 248 aaKnown RBP eCLIP14.7□□□□□ -0.064e-8■■□□□ 12.3
RTN4-201ENST00000317610 GTSCR1Q86UQ5 136 aa14.7□□□□□ -0.06
RTN4-201ENST00000317610 MRPL53Q96EL3 112 aaKnown RBP14.7□□□□□ -0.06
RTN4-201ENST00000317610 SELENOKQ9Y6D0 94 aa14.7□□□□□ -0.06
RTN4-201ENST00000317610 TTC28Q96AY4 2481 aa14.7□□□□□ -0.06
RTN4-201ENST00000317610 IGHV7-4-1A0A0J9YVY3 117 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 TMEM8BA6NDV4 472 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 TRGV3P03979 118 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 ZC2HC1BQ5TFG8 222 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 TACC2O95359 2948 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 IGHV4-4A0A075B6R2 117 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 RIPPLY3P57055 190 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 C11orf71Q6IPW1 123 aa14.69□□□□□ -0.06
RTN4-201ENST00000317610 GOSR1O95249 250 aa14.68□□□□□ -0.06
RTN4-201ENST00000317610 TRAV8-2A0A0B4J237 113 aa14.67□□□□□ -0.06
RTN4-201ENST00000317610 CLEC3BP05452 202 aa14.67□□□□□ -0.06
RTN4-201ENST00000317610 LAGE3Q14657 143 aa14.67□□□□□ -0.06
RTN4-201ENST00000317610 CEND1Q8N111 149 aa14.67□□□□□ -0.06
RTN4-201ENST00000317610 HIF1ANQ9NWT6 349 aa14.67□□□□□ -0.06
RTN4-201ENST00000317610 PIEZO2Q9H5I5 2752 aa14.67□□□□□ -0.06
RTN4-201ENST00000317610 MRPL35Q9NZE8 188 aaKnown RBP14.66□□□□□ -0.06
RTN4-201ENST00000317610 MYOZ3Q8TDC0 251 aa14.66□□□□□ -0.06
RTN4-201ENST00000317610 CCDC140Q96MF4 163 aa14.66□□□□□ -0.06
RTN4-201ENST00000317610 TRAV40A0A0B4J280 105 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 TAL2Q16559 108 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 C9orf47Q6ZRZ4 202 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 ANKHD1Q8IWZ3 2542 aaKnown RBP14.65□□□□□ -0.06
RTN4-201ENST00000317610 A0A087WX48 190 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 K7ERJ3 54 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 TCF15Q12870 199 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 TMEM78Q5T7P6 136 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 SIRPDQ9H106 197 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 TMEM160Q9NX00 188 aa14.65□□□□□ -0.06
RTN4-201ENST00000317610 ECSCRQ19T08 205 aa14.64□□□□□ -0.07
RTN4-201ENST00000317610 IGHV3-66A0A0C4DH42 116 aa14.64□□□□□ -0.07
RTN4-201ENST00000317610 ATP6V0E1O15342 81 aa14.64□□□□□ -0.07
RTN4-201ENST00000317610 ZFP36P26651 326 aaKnown RBP14.64□□□□□ -0.07
RTN4-201ENST00000317610 MAPKAPK5-AS1Q8N8E1 139 aa14.64□□□□□ -0.07
RTN4-201ENST00000317610 E9PLD3 99 aa14.63□□□□□ -0.07
RTN4-201ENST00000317610 AJUBAQ96IF1 538 aa14.63□□□□□ -0.07
RTN4-201ENST00000317610 U3KQE9 123 aa14.63□□□□□ -0.07
RTN4-201ENST00000317610 TRAV26-2A0A0B4J265 109 aa14.63□□□□□ -0.07
RTN4-201ENST00000317610 K7ENP7 123 aa14.63□□□□□ -0.07
RTN4-201ENST00000317610 C8orf86Q6ZUL3 223 aa14.63□□□□□ -0.07
RTN4-201ENST00000317610 NHP2Q9NX24 153 aaKnown RBP14.63□□□□□ -0.07
RTN4-201ENST00000317610 CLEC19AQ6UXS0 136 aa14.62□□□□□ -0.07
RTN4-201ENST00000317610 MRAP2Q96G30 205 aa14.62□□□□□ -0.07
RTN4-201ENST00000317610 DCHS2Q6V1P9 2916 aa14.62□□□□□ -0.07
RTN4-201ENST00000317610 ABCA4P78363 2273 aa14.62□□□□□ -0.07
RTN4-201ENST00000317610 PLNP26678 52 aa14.61□□□□□ -0.07
RTN4-201ENST00000317610 METTL26Q96S19 204 aa14.61□□□□□ -0.07
RTN4-201ENST00000317610 UFC1Q9Y3C8 167 aa14.61□□□□□ -0.07
RTN4-201ENST00000317610 TRAV12-1A0A0B4J245 112 aa14.61□□□□□ -0.07
RTN4-201ENST00000317610 EEF1AKMT3Q96AZ1 226 aa14.61□□□□□ -0.07
RTN4-201ENST00000317610 GVINP1Q7Z2Y8 2422 aa14.61□□□□□ -0.07
RTN4-201ENST00000317610 TMEM238C9JI98 176 aa14.6□□□□□ -0.07
RTN4-201ENST00000317610 CDSNQ15517 529 aa14.6□□□□□ -0.07
RTN4-201ENST00000317610 TRBV7-1A0A0A6YYK4 115 aa14.6□□□□□ -0.07
RTN4-201ENST00000317610 IGLL5B9A064 214 aa14.6□□□□□ -0.07
RTN4-201ENST00000317610 LINC01619G3V211 115 aa14.6□□□□□ -0.07
RTN4-201ENST00000317610 SPANXN1Q5VSR9 72 aa14.6□□□□□ -0.07
RTN4-201ENST00000317610 UBE2E1P51965 193 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 SMIM2Q9BVW6 85 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 IGHV3OR16-13A0A075B7E8 117 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 IGHV3-74A0A0B4J1X5 117 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 CCL21O00585 134 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 EFNA4P52798 201 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 Q6ZQT7 251 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 LENEPQ9Y5L5 61 aa14.59□□□□□ -0.07
RTN4-201ENST00000317610 TEX48A0A1B0GUV7 120 aa14.58□□□□□ -0.08
RTN4-201ENST00000317610 F8VRH5 84 aa14.58□□□□□ -0.08
RTN4-201ENST00000317610 G3V318 75 aa14.58□□□□□ -0.08
RTN4-201ENST00000317610 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.58□□□□□ -0.08
RTN4-201ENST00000317610 C12orf74Q32Q52 190 aa14.58□□□□□ -0.08
RTN4-201ENST00000317610 FOXI2Q6ZQN5 318 aa14.58□□□□□ -0.08
RTN4-201ENST00000317610 WNK2Q9Y3S1 2297 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 H7C1H1 209 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 LRBAP50851 2863 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 TRBV7-3A0A075B6L6 115 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 H3BVH4 76 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 SLC25A16P16260 332 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 ADORA2A-AS1P86434 159 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 PRR9Q5T870 116 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 ITLN2Q8WWU7 325 aaPredicted RBP14.57□□□□□ -0.08
RTN4-201ENST00000317610 ATP6V0BQ99437 205 aa14.57□□□□□ -0.08
RTN4-201ENST00000317610 CSMD1Q96PZ7 3565 aa14.56□□□□□ -0.08
RTN4-201ENST00000317610 IGHV3-49A0A0A0MS15 119 aa14.56□□□□□ -0.08
RTN4-201ENST00000317610 LINC01548A6NM66 108 aa14.56□□□□□ -0.08
RTN4-201ENST00000317610 F8W1H4 67 aa14.56□□□□□ -0.08
RTN4-201ENST00000317610 RPL24P83731 157 aaKnown RBP14.56□□□□□ -0.08
RTN4-201ENST00000317610 RIF1Q5UIP0 2472 aaKnown RBP14.55□□□□□ -0.08
RTN4-201ENST00000317610 CENPVL3A0A0U1RRI6 287 aa14.55□□□□□ -0.08
RTN4-201ENST00000317610 A0A1B0GWB2 263 aa14.55□□□□□ -0.08
RTN4-201ENST00000317610 ZNF207O43670 478 aaKnown RBP14.55□□□□□ -0.08
RTN4-201ENST00000317610 ORMDL2Q53FV1 153 aa14.55□□□□□ -0.08
RTN4-201ENST00000317610 TOMM6Q96B49 74 aa14.55□□□□□ -0.08
RTN4-201ENST00000317610 ZNF479Q96JC4 524 aa14.55□□□□□ -0.08
RTN4-201ENST00000317610 C9orf139Q6ZV77 190 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 156.1 ms