RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MSMBP08118 114 aa14.04□□□□□ -0.16
SHKBP1-201ENST00000291842 PF4V1P10720 104 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 DEFB1P60022 68 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 LINC01559Q495D7 138 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 C20orf173Q96LM9 149 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 TMEM208Q9BTX3 173 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 HIF1ANQ9NWT6 349 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 NDUFS8O00217 210 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 CRIP2P52943 208 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 FOXE3Q13461 319 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 RNF185Q96GF1 192 aa14.03□□□□□ -0.16
SHKBP1-201ENST00000291842 IGKV3-7A0A075B6H7 116 aa14.02□□□□□ -0.16
SHKBP1-201ENST00000291842 IGF1P05019 195 aa14.02□□□□□ -0.16
SHKBP1-201ENST00000291842 GLMPQ8WWB7 406 aa14.02□□□□□ -0.16
SHKBP1-201ENST00000291842 SPOCK3Q9BQ16 436 aa14.02□□□□□ -0.16
SHKBP1-201ENST00000291842 A6NDX4 124 aa14.02□□□□□ -0.17
SHKBP1-201ENST00000291842 SRSF2Q01130 221 aaKnown RBP14.02□□□□□ -0.17
SHKBP1-201ENST00000291842 DMRTA1Q5VZB9 504 aa14.02□□□□□ -0.17
SHKBP1-201ENST00000291842 MRPS16Q9Y3D3 137 aaKnown RBP14.02□□□□□ -0.17
SHKBP1-201ENST00000291842 ZFYVE26Q68DK2 2539 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 HSBP1L1C9JCN9 74 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 IGHG2P01859 326 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 LINC01545Q5VT33 79 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 ST20Q9HBF5 79 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 CENPEQ02224 2701 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 GATA1P15976 413 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 EVI2AP22794 236 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 ZNF738Q8NE65 137 aa14.01□□□□□ -0.17
SHKBP1-201ENST00000291842 RPL11P62913 178 aaKnown RBP14□□□□□ -0.17
SHKBP1-201ENST00000291842 Q6ZVH6 145 aa14□□□□□ -0.17
SHKBP1-201ENST00000291842 WFDC3Q8IUB2 231 aa14□□□□□ -0.17
SHKBP1-201ENST00000291842 PRR9Q5T870 116 aa14□□□□□ -0.17
SHKBP1-201ENST00000291842 GPHB5Q86YW7 130 aa14□□□□□ -0.17
SHKBP1-201ENST00000291842 CNFNQ9BYD5 112 aa14□□□□□ -0.17
SHKBP1-201ENST00000291842 POLQO75417 2590 aa14□□□□□ -0.17
SHKBP1-201ENST00000291842 TMEM95Q3KNT9 176 aa13.99□□□□□ -0.17
SHKBP1-201ENST00000291842 C9orf47Q6ZRZ4 202 aa13.99□□□□□ -0.17
SHKBP1-201ENST00000291842 OR4X2Q8NGF9 303 aa13.99□□□□□ -0.17
SHKBP1-201ENST00000291842 PRB1P04280 392 aa13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 HIST1H1AQ02539 215 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 CYB5R2Q6BCY4 276 aa13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 ZANQ9Y493 2812 aa13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 NDUFA4O00483 81 aa13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 NPSP0C0P6 89 aa13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 TCTAP57738 103 aa13.98□□□□□ -0.17
SHKBP1-201ENST00000291842 DLEU1O43261 78 aa13.97□□□□□ -0.17
SHKBP1-201ENST00000291842 TCF21O43680 179 aa13.97□□□□□ -0.17
SHKBP1-201ENST00000291842 MAPK1IP1LQ8NDC0 245 aa13.97□□□□□ -0.17
SHKBP1-201ENST00000291842 MRPL53Q96EL3 112 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-201ENST00000291842 USP9YO00507 2555 aaPredicted RBP13.97□□□□□ -0.17
SHKBP1-201ENST00000291842 SCRT2Q9NQ03 307 aa13.97□□□□□ -0.17
SHKBP1-201ENST00000291842 IGHV7-4-1A0A0J9YVY3 117 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 SPRY2O43597 315 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 SNAI2O43623 268 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 HBDP02042 147 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 TM4SF20Q53R12 229 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 SLC25A34Q6PIV7 304 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 ATP6V0BQ99437 205 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 FAM208BQ5VWN6 2430 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 FBN2P35556 2912 aa13.96□□□□□ -0.17
SHKBP1-201ENST00000291842 B4DSR2 109 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 F6UB75 175 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 SRD5A1P18405 259 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 EDN2P20800 178 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 C9orf139Q6ZV77 190 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 USMG5Q96IX5 58 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 NPFFR1Q9GZQ6 430 aa13.96□□□□□ -0.18
SHKBP1-201ENST00000291842 TRAV26-2A0A0B4J265 109 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 TNFRSF6BO95407 300 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 CACNG7P62955 275 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 MPV17L2Q567V2 206 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 C18orf15Q96N68 181 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 MAP1LC3AQ9H492 121 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 UFC1Q9Y3C8 167 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 GOLT1BQ9Y3E0 138 aa13.95□□□□□ -0.18
SHKBP1-201ENST00000291842 H3BVH4 76 aa13.94□□□□□ -0.18
SHKBP1-201ENST00000291842 ANKRD17O75179 2603 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 SOCS3O14543 225 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 SPANXN1Q5VSR9 72 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 RHPN1-AS1Q9BWJ2 59 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 ZNF462Q96JM2 2506 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 IGLV1-40P01703 118 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 IGHV4-59P01825 116 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 PPBPP02775 128 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 KIR3DS1Q14943 382 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 ZNF124Q15973 351 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 C10orf99Q6UWK7 81 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 IFI27L1Q96BM0 104 aa13.93□□□□□ -0.18
SHKBP1-201ENST00000291842 H3BUA1 57 aa13.92□□□□□ -0.18
SHKBP1-201ENST00000291842 NUDT3O95989 172 aa13.92□□□□□ -0.18
SHKBP1-201ENST00000291842 OR10J6PQ8NGY7 276 aa13.92□□□□□ -0.18
SHKBP1-201ENST00000291842 MS4A6AQ9H2W1 248 aa13.92□□□□□ -0.18
SHKBP1-201ENST00000291842 LEPP41159 167 aa13.91□□□□□ -0.18
SHKBP1-201ENST00000291842 DEFB112Q30KQ8 113 aa13.91□□□□□ -0.18
SHKBP1-201ENST00000291842 ANKRD39Q53RE8 183 aa13.91□□□□□ -0.18
SHKBP1-201ENST00000291842 ZFAND2AQ8N6M9 145 aa13.91□□□□□ -0.18
SHKBP1-201ENST00000291842 LRRK2Q5S007 2527 aa13.91□□□□□ -0.18
SHKBP1-201ENST00000291842 USP24Q9UPU5 2620 aa13.91□□□□□ -0.18
SHKBP1-201ENST00000291842 PPP1R14DQ9NXH3 145 aa13.9□□□□□ -0.18
SHKBP1-201ENST00000291842 DOPEY2Q9Y3R5 2298 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms