RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 C20orf144Q9BQM9 153 aa9.84□□□□□ -0.83
SPTLC1-201ENST00000262554 LRRK2Q5S007 2527 aa9.84□□□□□ -0.83
SPTLC1-201ENST00000262554 MAP1AP78559 2803 aaPredicted RBP9.84□□□□□ -0.83
SPTLC1-201ENST00000262554 CSN3P07498 182 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 TDRG1Q3Y452 100 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 PRSS57Q6UWY2 283 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 LINC00477Q96M19 166 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 CNFNQ9BYD5 112 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 SMPXQ9UHP9 88 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 PAM16Q9Y3D7 125 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 D6R8Y8 96 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 OR5AL1P0C617 328 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 PRRC2AP48634 2157 aaKnown RBP9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 PMCHL1Q16048 86 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 EBLN2Q6P2I7 272 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 AMN1Q8IY45 258 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 ORMDL3Q8N138 153 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 UFC1Q9Y3C8 167 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 U3KQK5 164 aa9.83□□□□□ -0.84
SPTLC1-201ENST00000262554 ZFHX3Q15911 3703 aa9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 C2orf70A6NJV1 201 aa9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 HOXA3O43365 443 aaPredicted RBP9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 C10orf99Q6UWK7 81 aa9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 PRSS3P2Q8NHM4 247 aa9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 PSMG3-AS1Q96PY0 264 aa9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 TMEM191AQ9H0A3 160 aa9.82□□□□□ -0.84
SPTLC1-201ENST00000262554 IGKV3D-20A0A0C4DH25 116 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 LEPROTL1O95214 131 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 FOXE3Q13461 319 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 MRPL51Q4U2R6 128 aaKnown RBP9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 FA2HQ7L5A8 372 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 PRELID3AQ96N28 172 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 TMEM70Q9BUB7 260 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 RPLP1P05386 114 aaKnown RBP9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 ELANEP08246 267 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 SAMD13Q5VXD3 122 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 ZNF702PQ9H963 129 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 AP5S1Q9NUS5 200 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 C11orf21Q9P2W6 132 aa9.81□□□□□ -0.84
SPTLC1-201ENST00000262554 IGKV3-7A0A075B6H7 116 aa9.8□□□□□ -0.84
SPTLC1-201ENST00000262554 CKS2P33552 79 aa9.8□□□□□ -0.84
SPTLC1-201ENST00000262554 ID1P41134 155 aa9.8□□□□□ -0.84
SPTLC1-201ENST00000262554 MIEN1Q9BRT3 115 aa9.8□□□□□ -0.84
SPTLC1-201ENST00000262554 SPATA45Q537H7 98 aa9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 KRTAP1-3Q8IUG1 177 aa9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 MSRB1Q9NZV6 116 aa9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 HSPB8Q9UJY1 196 aa9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 POLQO75417 2590 aa9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 USP9YO00507 2555 aaPredicted RBP9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 LGALS1P09382 135 aaKnown RBP9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 OR8A1Q8NGG7 326 aa9.79□□□□□ -0.84
SPTLC1-201ENST00000262554 TRBV7-9A0A0J9YWB2 115 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 CRXO43186 299 aaPredicted RBP9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 PPBPP02775 128 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 IFI27P40305 119 aaPredicted RBP9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 LBHQ53QV2 105 aaPredicted RBP9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 PRR9Q5T870 116 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 ZNF705AQ6ZN79 300 aaPredicted RBP9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 ZFAND2AQ8N6M9 145 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 OR10AG1Q8NH19 301 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 MYOZ3Q8TDC0 251 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 MAP1LC3CQ9BXW4 147 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 SIGLEC8Q9NYZ4 499 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 EPG5Q9HCE0 2579 aa9.78□□□□□ -0.84
SPTLC1-201ENST00000262554 TRAV21A0A0B4J279 112 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 LOC389332A0A1B0GUA5 103 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 C20orf202A1L168 122 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 SYS1-DBNDD2H3BUS1 97 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 J3KRW8 73 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 SRD5A1P18405 259 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 EDN2P20800 178 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 SMIM15Q7Z3B0 74 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 RNF185Q96GF1 192 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 UBE2E2Q96LR5 201 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 CSMD2Q7Z408 3487 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 PTPN13Q12923 2485 aa9.77□□□□□ -0.85
SPTLC1-201ENST00000262554 DEFB1P60022 68 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 CACNG7P62955 275 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 LINC00173Q6ZV60 143 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 ATOH7Q8N100 152 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 TEX29Q8N6K0 151 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 KLHDC1Q8N7A1 406 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 FAM19A4Q96LR4 140 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 SELENOKQ9Y6D0 94 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 TRAV9-2A0A087WT02 112 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 F6UB75 175 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 SMKR1H3BMG3 65 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 LGALS9O00182 355 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 SNAI2O43623 268 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 NPYP01303 97 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 Q6ZQT7 251 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 RNF152Q8N8N0 203 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 DCANP1Q8TF63 244 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 LAMTOR2Q9Y2Q5 125 aa9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 TIMM8BQ9Y5J9 83 aaPredicted RBP9.76□□□□□ -0.85
SPTLC1-201ENST00000262554 CENPEQ02224 2701 aa9.75□□□□□ -0.85
SPTLC1-201ENST00000262554 IGHV4-4A0A075B6R2 117 aa9.75□□□□□ -0.85
SPTLC1-201ENST00000262554 TCF21O43680 179 aa9.75□□□□□ -0.85
SPTLC1-201ENST00000262554 NCR2O95944 276 aa9.75□□□□□ -0.85
SPTLC1-201ENST00000262554 RNASE4P34096 147 aaKnown RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms