RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MRPL35Q9NZE8 188 aaKnown RBP10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 UFC1Q9Y3C8 167 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 PIEZO1Q92508 2521 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 LOC107984156A0A0G2JMH3 177 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 TRBV6-1A0A0K0K1D8 114 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 GATA1P15976 413 aaPredicted RBP10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 ARL17AQ8IVW1 177 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 DMXL2Q8TDJ6 3036 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 H3BRN7 92 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 OVOL3O00110 214 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 HOXB4P17483 251 aaPredicted RBP10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 ZNF474Q6S9Z5 364 aaPredicted RBP10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 FAM27E3Q08E93 113 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 TEX36Q5VZQ5 186 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 SMPXQ9UHP9 88 aa10.1□□□□□ -0.79
SFSWAP-209ENST00000540469 GAS8-AS1O95177 125 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 MRAP2Q96G30 205 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 KLK15Q9H2R5 256 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 MRPL16Q9NX20 251 aaKnown RBP10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 DKK4Q9UBT3 224 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 HHLA3Q9XRX5 114 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 K7EM74 188 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 SYT8Q8NBV8 401 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 C20orf78Q9BR46 151 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 TM2D2Q9BX73 214 aa10.09□□□□□ -0.79
SFSWAP-209ENST00000540469 ZNF418Q8TF45 676 aaPredicted RBP10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 SPATA25Q9BR10 227 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 CYSLTR1Q9Y271 337 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 IGHV3OR16-8A0A075B7F1 116 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 CD40P25942 277 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 ZNF491Q8N8L2 437 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 PHLDA1Q8WV24 401 aaPredicted RBP10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 OR11H12B2RN74 326 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 SPINK8P0C7L1 97 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 IGHV1-8P0DP01 117 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 PVRIGQ6DKI7 326 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 SHISA2Q6UWI4 295 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 OR11H1Q8NG94 326 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 OR11H2Q8NH07 326 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 PRR25Q96S07 402 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 DYNLRB1Q9NP97 96 aa10.08□□□□□ -0.8
SFSWAP-209ENST00000540469 I3L2K1 104 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 WT1P19544 449 aaPredicted RBP10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 RRN3P1Q2M238 152 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 MAPKAPK5-AS1Q8N8E1 139 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 CACNA1BQ00975 2339 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 IGHV3-35A0A0C4DH35 117 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 C17orf100A8MU93 164 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 SRSF6Q13247 344 aaKnown RBP10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 SCGB1D4Q6XE38 83 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 ZNF502Q8TBZ5 544 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 SHISA9B4DS77 424 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 TEX22C9J3V5 150 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 IGHV3-23P01764 117 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 LINC00311Q8N616 119 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 PGPEP1Q9NXJ5 209 aa10.07□□□□□ -0.8
SFSWAP-209ENST00000540469 PRRG2O14669 202 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 HES1Q14469 280 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 AKAP13Q12802 2813 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 PSMB2P49721 201 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 SRSF9Q13242 221 aaKnown RBP eCLIP10.06□□□□□ -0.82e-6■□□□□ 9
SFSWAP-209ENST00000540469 MRGPRG-AS1Q2M3A8 158 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 DEFB124Q8NES8 71 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 RNF183Q96D59 192 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 IGHV1-3A0A0C4DH29 117 aa10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 HOXA3O43365 443 aaPredicted RBP10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 ZNF80P51504 273 aaPredicted RBP10.06□□□□□ -0.8
SFSWAP-209ENST00000540469 RPL7P18124 248 aaKnown RBP10.05□□□□□ -0.8
SFSWAP-209ENST00000540469 HLA-DMBP28068 263 aa10.05□□□□□ -0.8
SFSWAP-209ENST00000540469 LOXP28300 417 aaPredicted RBP10.05□□□□□ -0.8
SFSWAP-209ENST00000540469 EFNA4P52798 201 aa10.05□□□□□ -0.8
SFSWAP-209ENST00000540469 PAX8Q06710 450 aa10.05□□□□□ -0.8
SFSWAP-209ENST00000540469 FABP5P3A8MUU1 101 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 TMEM178BH3BS89 294 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 H3BVH4 76 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 TCTEX1D4Q5JR98 221 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 CTSZQ9UBR2 303 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 TRAV26-2A0A0B4J265 109 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 C16orf97H3BN30 126 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 K7EIM0 57 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 PDE6HQ13956 83 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 SEM1Q6ZVN7 128 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 PIFOQ8TCI5 191 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 TGFAP01135 160 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 MT-ATP8P03928 68 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 SRSF1Q07955 248 aaKnown RBP eCLIP10.04□□□□□ -0.85e-8■■■□□ 18.4
SFSWAP-209ENST00000540469 LAGE3Q14657 143 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 TAL2Q16559 108 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 DTX2Q86UW9 622 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 PRSS33Q8NF86 280 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 GLMPQ8WWB7 406 aa10.04□□□□□ -0.8
SFSWAP-209ENST00000540469 CDX4O14627 284 aaPredicted RBP10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 DEFB109BQ30KR1 87 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 C8orf86Q6ZUL3 223 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 C22orf34Q6ZV56 151 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 ASCL5Q7RTU5 278 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 RNF185Q96GF1 192 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 B5MCH6 92 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 FCN3O75636 299 aa10.03□□□□□ -0.8
SFSWAP-209ENST00000540469 CEACAM4O75871 244 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms