RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 BRD3OSQ6XYD6 125 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 Q6ZN92 141 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 C8orf86Q6ZUL3 223 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 PRELID3AQ96N28 172 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 ST20Q9HBF5 79 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 MRPS16Q9Y3D3 137 aaKnown RBP11.43□□□□□ -0.58
NUP54-217ENST00000514987 TMEM213A2RRL7 107 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 OR4C46A6NHA9 309 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 B4DSR2 109 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 TCAPO15273 167 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 PPBPP02775 128 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 CSN3P07498 182 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 PRR31Q5SQ13 230 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 C9orf47Q6ZRZ4 202 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 C9orf139Q6ZV77 190 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 SPATA12Q7Z6I5 190 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 ZNF580Q9UK33 172 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 LENEPQ9Y5L5 61 aa11.42□□□□□ -0.58
NUP54-217ENST00000514987 IGHV4-30-2A0A087WSY4 118 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 HSBP1L1C9JCN9 74 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 PRAC2D3DTV9 90 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 D6R8Y8 96 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 IGHV4-38-2P0DP08 117 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 ERCC8Q13216 396 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 MRPL51Q4U2R6 128 aaKnown RBP11.41□□□□□ -0.58
NUP54-217ENST00000514987 COL5A1-AS1Q5SY13 56 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 ATOH7Q8N100 152 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 GLMPQ8WWB7 406 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 AGPAT4-IT1Q9H0P7 198 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 LAMTOR2Q9Y2Q5 125 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 TRAV8-2A0A0B4J237 113 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 A0A0G2JLM5 398 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 H3BUX3 64 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 RNF224P0DH78 156 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 PRB4P10163 310 aaPredicted RBP11.41□□□□□ -0.58
NUP54-217ENST00000514987 PPIFP30405 207 aaKnown RBP11.41□□□□□ -0.58
NUP54-217ENST00000514987 RNF182Q8N6D2 247 aa11.41□□□□□ -0.58
NUP54-217ENST00000514987 IGHV3-66A0A0C4DH42 116 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 SLC25A16P16260 332 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 CKS2P33552 79 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 IL17RELQ6ZVW7 336 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 AMN1Q8IY45 258 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 C16orf92Q96LL3 132 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 TACC2O95359 2948 aa11.4□□□□□ -0.58
NUP54-217ENST00000514987 ZNF207O43670 478 aaKnown RBP11.39□□□□□ -0.59
NUP54-217ENST00000514987 IGLL1P15814 213 aa11.39□□□□□ -0.59
NUP54-217ENST00000514987 TSPOP30536 169 aa11.39□□□□□ -0.59
NUP54-217ENST00000514987 ZNF747Q9BV97 191 aa11.39□□□□□ -0.59
NUP54-217ENST00000514987 NPFFR1Q9GZQ6 430 aa11.39□□□□□ -0.59
NUP54-217ENST00000514987 MS4A6AQ9H2W1 248 aa11.39□□□□□ -0.59
NUP54-217ENST00000514987 SIGLEC8Q9NYZ4 499 aa11.39□□□□□ -0.59
NUP54-217ENST00000514987 NCOR2Q9Y618 2525 aa11.38□□□□□ -0.59
NUP54-217ENST00000514987 OVOL1O14753 267 aa11.38□□□□□ -0.59
NUP54-217ENST00000514987 IFI27P40305 119 aaPredicted RBP11.38□□□□□ -0.59
NUP54-217ENST00000514987 LY6EQ16553 131 aa11.38□□□□□ -0.59
NUP54-217ENST00000514987 LINC01545Q5VT33 79 aa11.38□□□□□ -0.59
NUP54-217ENST00000514987 LINC00173Q6ZV60 143 aa11.38□□□□□ -0.59
NUP54-217ENST00000514987 LINC00477Q96M19 166 aa11.38□□□□□ -0.59
NUP54-217ENST00000514987 IGHV3OR16-13A0A075B7E8 117 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 IGHV3-74A0A0B4J1X5 117 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 ZNF575Q86XF7 245 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 PSMG3-AS1Q96PY0 264 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 LINC00527Q9UJ94 153 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 CHD8Q9HCK8 2581 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 IGHV3-49A0A0A0MS15 119 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 TCF21O43680 179 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 IGLV1-40P01703 118 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 MAJINQ3KP22 176 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 SMIM15Q7Z3B0 74 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 MAP1LC3AQ9H492 121 aa11.37□□□□□ -0.59
NUP54-217ENST00000514987 MED13LQ71F56 2210 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 J3QLI3 93 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 HBDP02042 147 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 PF4V1P10720 104 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 CACNG7P62955 275 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 SAMD13Q5VXD3 122 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 OR10J6PQ8NGY7 276 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 ABCA2Q9BZC7 2435 aa11.36□□□□□ -0.59
NUP54-217ENST00000514987 BATFQ16520 125 aa11.35□□□□□ -0.59
NUP54-217ENST00000514987 ZNF738Q8NE65 137 aa11.35□□□□□ -0.59
NUP54-217ENST00000514987 OR4X2Q8NGF9 303 aa11.35□□□□□ -0.59
NUP54-217ENST00000514987 NXT2Q9NPJ8 142 aaKnown RBP11.35□□□□□ -0.59
NUP54-217ENST00000514987 IGHV4-4A0A075B6R2 117 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 IGKV3D-20A0A0C4DH25 116 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 MUC21A0A0G2JKD1 596 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 TRBV7-9A0A0J9YWB2 115 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 MUC21A0A140T8X8 626 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 LOC389332A0A1B0GUA5 103 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 TMEM89A2RUT3 159 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 LINC01546A6NGU7 62 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 MUC21Q5SSG8 566 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 LINC01356Q8N9X3 169 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 DPF1Q92782 380 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 RNF185Q96GF1 192 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 PMCHL2Q9BQD1 86 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 ITPR1Q14643 2758 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 RELNP78509 3460 aa11.34□□□□□ -0.59
NUP54-217ENST00000514987 K7EMT4 169 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 NPYP01303 97 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 LGALS9BQ3B8N2 356 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms