RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 AAMDCQ9H7C9 122 aa11.16□□□□□ -0.62
HDAC6-213ENST00000462730 IGHV3-66A0A0C4DH42 116 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 TRBV12-3P01733 135 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 HLA-DQA1P01909 254 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 PRB4P10163 310 aaPredicted RBP11.15□□□□□ -0.62
HDAC6-213ENST00000462730 AMTP48728 403 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 RAB9AP51151 201 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 PSG9Q00887 426 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 DMRTA1Q5VZB9 504 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 FAM231DQ6ZW35 169 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 DUX5Q96PT3 197 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 NRN1Q9NPD7 142 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 YAE1D1Q9NRH1 226 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 ZNF580Q9UK33 172 aa11.15□□□□□ -0.62
HDAC6-213ENST00000462730 CUBNO60494 3623 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.14□□□□□ -0.63
HDAC6-213ENST00000462730 A0A1W2PS18 150 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 DIRC3C9JPN6 131 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 M0R3E3 92 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 IGLV2-11P01706 119 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 SRIP30626 198 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 MAJINQ3KP22 176 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 MRPL54Q6P161 138 aaKnown RBP11.14□□□□□ -0.63
HDAC6-213ENST00000462730 RASL11AQ6T310 242 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 PRNTQ86SH4 94 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 MLST8Q9BVC4 326 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 IGHV3OR16-13A0A075B7E8 117 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 IGHV3-74A0A0B4J1X5 117 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 TRBV6-1A0A0K0K1D8 114 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 K7EQM0 130 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 BUB3O43684 328 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 ZNF253O75346 499 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 PMCHL1Q16048 86 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 TMEM75Q8N9X5 138 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 NUDT10Q8NFP7 164 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 NUDT11Q96G61 164 aa11.14□□□□□ -0.63
HDAC6-213ENST00000462730 SONP18583 2426 aaKnown RBP11.13□□□□□ -0.63
HDAC6-213ENST00000462730 MYO9AB2RTY4 2548 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 ANK3Q12955 4377 aaKnown RBP11.13□□□□□ -0.63
HDAC6-213ENST00000462730 ACANP16112 2415 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 IGHV3-49A0A0A0MS15 119 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 ZNF785A8K8V0 405 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 ZNF324O75467 553 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-213ENST00000462730 APOHP02749 345 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-213ENST00000462730 PMCHP20382 165 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 CTRLP40313 264 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 OR4X2Q8NGF9 303 aa11.13□□□□□ -0.63
HDAC6-213ENST00000462730 MRPS16Q9Y3D3 137 aaKnown RBP11.13□□□□□ -0.63
HDAC6-213ENST00000462730 A0A0G2JLM5 398 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 IZUMO1RA6ND01 250 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 K7EP13 123 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 CA1P00915 261 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-213ENST00000462730 CSN1S1P47710 185 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 SMIM15Q7Z3B0 74 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 GRAMD2BQ96HH9 432 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 NPFFR1Q9GZQ6 430 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 A0A087X0K7 114 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 APCSP02743 223 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 PSG3Q16557 428 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 Q71RC1 249 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-213ENST00000462730 PRSS22Q9GZN4 317 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 ZNF702PQ9H963 129 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 ZNF492Q9P255 531 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 PSG8Q9UQ74 426 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 U3KQE9 123 aa11.12□□□□□ -0.63
HDAC6-213ENST00000462730 NDUFA4O00483 81 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 PPBPP02775 128 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 RPS20P60866 119 aaKnown RBP11.11□□□□□ -0.63
HDAC6-213ENST00000462730 BATFQ16520 125 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 FAM162BQ5T6X4 162 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 IGFL4Q6B9Z1 124 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 C16orf54Q6UWD8 224 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 LINC00322Q6ZN03 302 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-213ENST00000462730 ASCL2Q99929 193 aa11.11□□□□□ -0.63
HDAC6-213ENST00000462730 IGHG4P01861 327 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 HLA-DMBP28068 263 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 HNRNPA3P51991 378 aaKnown RBP11.1□□□□□ -0.63
HDAC6-213ENST00000462730 SLAQ13239 276 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 SPATA45Q537H7 98 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 NIT1Q86X76 327 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 WIPF2Q8TF74 440 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-213ENST00000462730 ZNF331Q9NQX6 463 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-213ENST00000462730 C3orf79P0CE67 100 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 PSMB8P28062 276 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 C10orf99Q6UWK7 81 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 UNQ9165/PRO28630Q6UXU0 137 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 TMEM86BQ8N661 226 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 TSKUQ8WUA8 353 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 SMR3AQ99954 134 aa11.1□□□□□ -0.63
HDAC6-213ENST00000462730 RPP21Q9H633 154 aaKnown RBP11.1□□□□□ -0.63
HDAC6-213ENST00000462730 IGKV2-40A0A087WW87 121 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-213ENST00000462730 SERTM2A0A1B0GWG4 89 aa11.09□□□□□ -0.63
HDAC6-213ENST00000462730 C19orf71A6NCJ1 209 aa11.09□□□□□ -0.63
HDAC6-213ENST00000462730 CHEK1O14757 476 aa11.09□□□□□ -0.63
HDAC6-213ENST00000462730 IGKV2D-40P01614 121 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-213ENST00000462730 P01737 135 aa11.09□□□□□ -0.63
HDAC6-213ENST00000462730 IGLC3P0DOY3 106 aa11.09□□□□□ -0.63
HDAC6-213ENST00000462730 FAM19A2Q8N3H0 131 aa11.09□□□□□ -0.63
HDAC6-213ENST00000462730 C18orf32Q8TCD1 76 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms