RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 HS3ST6Q96QI5 342 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 MPZP25189 248 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 STRCQ7RTU9 1775 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 SCN10AQ9Y5Y9 1956 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 hDV102S1A0JD36 115 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 Q8NFD4 153 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 TM2D2Q9BX73 214 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 WFDC1Q9HC57 220 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 ZNF462Q96JM2 2506 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 TRBV6-6A0A0A6YYG2 114 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 C15orf62A8K5M9 175 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 EGR2P11161 476 aaPredicted RBP5.75□□□□□ -1.49
UPF2-203ENST00000397053 LAIR2Q6ISS4 152 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 Q6ZWC4 215 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 FREM1Q5H8C1 2179 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 ABCA3Q99758 1704 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 IGHV7-4-1A0A0J9YVY3 117 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BKO60814 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BJP06899 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BOP23527 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 LOXP28300 417 aaPredicted RBP5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BBP33778 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BDP58876 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BCP62807 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST2H2BEQ16778 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.75□□□□□ -1.49
UPF2-203ENST00000397053 MORN5Q5VZ52 161 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 PRSS33Q8NF86 280 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BHQ93079 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BNQ99877 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BMQ99879 126 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 TMEM14BQ9NUH8 114 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 TRBV24-1A0A075B6N3 115 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 CHKB-CPT1BH3BT56 60 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 NDUFS7O75251 213 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 UBE2AP49459 152 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 B3GALT5-AS1P59052 145 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 BOD1L2Q8IYS8 172 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 C15orf53Q8NAA6 179 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 ICOSQ9Y6W8 199 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 TNS1Q9HBL0 1735 aaKnown RBP5.75□□□□□ -1.49
UPF2-203ENST00000397053 RREB1Q92766 1687 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 IGLV3-9A0A075B6K5 115 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 HERVK_113P63121 156 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 LINC00479Q96M42 142 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 SMAD5-AS1Q9Y6J3 95 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 LY96Q9Y6Y9 160 aa5.75□□□□□ -1.49
UPF2-203ENST00000397053 TLN2Q9Y4G6 2542 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 A0A087X0K7 114 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 TMEM213A2RRL7 107 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 F8W735 103 aaPredicted RBP5.74□□□□□ -1.49
UPF2-203ENST00000397053 DEFB136Q30KP8 78 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 LY6G6FQ5SQ64 297 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 C5orf24Q7Z6I8 188 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 LHFPL1Q86WI0 220 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 MTCL1Q9Y4B5 1905 aaKnown RBP5.74□□□□□ -1.49
UPF2-203ENST00000397053 PLXNB2O15031 1838 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 TRAV1-1A0A0B4J248 108 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 SYS1-DBNDD2H3BUS1 97 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 IGHG4P01861 327 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 FUSP35637 526 aaKnown RBP eCLIP5.74□□□□□ -1.49
UPF2-203ENST00000397053 U3KQE9 123 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 SCN4AP35499 1836 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 PHF3Q92576 2039 aaKnown RBP5.74□□□□□ -1.49
UPF2-203ENST00000397053 IGLL5B9A064 214 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 FNDC10F2Z333 226 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 PYGO2Q9BRQ0 406 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 TRPM3Q9HCF6 1732 aaPredicted RBP5.74□□□□□ -1.49
UPF2-203ENST00000397053 LYPD3O95274 346 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 SH2D6Q7Z4S9 175 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 STPG4Q8N801 248 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 Q8TCH9 128 aa5.74□□□□□ -1.49
UPF2-203ENST00000397053 TRAV13-2A0A0B4J235 113 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 IGHV3-30P01768 117 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 IGHV3-33P01772 117 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 IGHV3-30-3P0DP02 117 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 IGHV3-30-5P0DP03 117 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 FOXI2Q6ZQN5 318 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 MRPL53Q96EL3 112 aaKnown RBP5.73□□□□□ -1.49
UPF2-203ENST00000397053 LRRK2Q5S007 2527 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 NCOR2Q9Y618 2525 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 TRBV19A0A075B6N1 114 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 C5orf63A6NC05 138 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 ESM1Q9NQ30 184 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 IGHV4-4A0A075B6R2 117 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 ZNF493Q6ZR52 646 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 C5orf38Q86SI9 138 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 C3orf79P0CE67 100 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 GYPEP15421 78 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 TEX36Q5VZQ5 186 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 CFHR4Q92496 578 aa5.73□□□□□ -1.49
UPF2-203ENST00000397053 IGLV10-54A0A075B6I4 117 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 TINCRA0A1B0GVN0 87 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 A0A1B0GW64 132 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 MPV17L2Q567V2 206 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 KIR3DS1Q14943 382 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 TMEM75Q8N9X5 138 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 ATP6V0E2Q8NHE4 81 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 PRR25Q96S07 402 aa5.72□□□□□ -1.49
UPF2-203ENST00000397053 HIST1H2BLQ99880 126 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms