RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PCP2Q8IVA1 136 aa8.79□□□□□ -1
CUX1-204ENST00000393824 PHLDA1Q8WV24 401 aaPredicted RBP8.79□□□□□ -1
CUX1-204ENST00000393824 CCL13Q99616 98 aa8.79□□□□□ -1
CUX1-204ENST00000393824 MALRD1Q5VYJ5 2156 aa8.79□□□□□ -1
CUX1-204ENST00000393824 FAM106CPP0CH98 169 aa8.79□□□□□ -1
CUX1-204ENST00000393824 IFI27P40305 119 aaPredicted RBP8.79□□□□□ -1
CUX1-204ENST00000393824 CACNG7P62955 275 aa8.79□□□□□ -1
CUX1-204ENST00000393824 FAM106AQ4KMX7 169 aa8.79□□□□□ -1
CUX1-204ENST00000393824 LYPD2Q6UXB3 125 aa8.79□□□□□ -1
CUX1-204ENST00000393824 ZNF493Q6ZR52 646 aa8.79□□□□□ -1
CUX1-204ENST00000393824 ZNF418Q8TF45 676 aaPredicted RBP8.79□□□□□ -1
CUX1-204ENST00000393824 IGFBPL1Q8WX77 278 aa8.79□□□□□ -1
CUX1-204ENST00000393824 TRBV6-1A0A0K0K1D8 114 aa8.78□□□□□ -1
CUX1-204ENST00000393824 ARMS2P0C7Q2 107 aa8.78□□□□□ -1
CUX1-204ENST00000393824 LOXL1Q08397 574 aaPredicted RBP8.78□□□□□ -1
CUX1-204ENST00000393824 Q86TA4 180 aa8.78□□□□□ -1
CUX1-204ENST00000393824 TMEM167AQ8TBQ9 72 aa8.78□□□□□ -1
CUX1-204ENST00000393824 PSMG3-AS1Q96PY0 264 aa8.78□□□□□ -1
CUX1-204ENST00000393824 HIF1ANQ9NWT6 349 aa8.78□□□□□ -1
CUX1-204ENST00000393824 ARHGAP32A7KAX9 2087 aa8.77□□□□□ -1
CUX1-204ENST00000393824 GATA3P23771 443 aa8.77□□□□□ -1
CUX1-204ENST00000393824 FXYD2P54710 66 aa8.77□□□□□ -1
CUX1-204ENST00000393824 PAX8Q06710 450 aa8.77□□□□□ -1
CUX1-204ENST00000393824 BCL6BQ8N143 479 aaPredicted RBP8.77□□□□□ -1
CUX1-204ENST00000393824 ZNF414Q96IQ9 312 aa8.77□□□□□ -1
CUX1-204ENST00000393824 Q9H3A6 140 aa8.77□□□□□ -1
CUX1-204ENST00000393824 CTSZQ9UBR2 303 aa8.77□□□□□ -1
CUX1-204ENST00000393824 U3KQK5 164 aa8.77□□□□□ -1
CUX1-204ENST00000393824 FLNBO75369 2602 aaKnown RBP8.77□□□□□ -1.01
CUX1-204ENST00000393824 PDZD2O15018 2839 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 ZNF785A8K8V0 405 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 E9PLD3 99 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 BRI3O95415 125 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 IGLV2-11P01706 119 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 GP9P14770 177 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 HOXB4P17483 251 aaPredicted RBP8.77□□□□□ -1.01
CUX1-204ENST00000393824 NMUP48645 174 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 TEX36Q5VZQ5 186 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 CIARTQ8N365 385 aaPredicted RBP8.77□□□□□ -1.01
CUX1-204ENST00000393824 GAFA1Q96PS6 74 aa8.77□□□□□ -1.01
CUX1-204ENST00000393824 hADV38S2A0JD32 116 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 HBDP02042 147 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 COX6B1P14854 86 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 WFDC2Q14508 124 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 Q6AWC8 147 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 IFI27L1Q96BM0 104 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 C18orf15Q96N68 181 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 SPAG8Q99932 426 aaPredicted RBP8.76□□□□□ -1.01
CUX1-204ENST00000393824 TM2D2Q9BX73 214 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 ERG28Q9UKR5 140 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 TNFRSF18Q9Y5U5 241 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 TANC2Q9HCD6 1990 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 AKAP9Q99996 3911 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 A0A1W2PRD5 423 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 A0A1W2PRF3 423 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 A0A1W2PRM7 423 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 E7EUB6 86 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 TNFRSF13BO14836 293 aaPredicted RBP8.76□□□□□ -1.01
CUX1-204ENST00000393824 ORM2P19652 201 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 GCSHP23434 173 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 PVRIGQ6DKI7 326 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 SRSF12Q8WXF0 261 aaKnown RBP8.76□□□□□ -1.01
CUX1-204ENST00000393824 HARBI1Q96MB7 349 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 MRPL36Q9P0J6 103 aaKnown RBP8.76□□□□□ -1.01
CUX1-204ENST00000393824 LINC00312Q9Y6C7 94 aa8.76□□□□□ -1.01
CUX1-204ENST00000393824 IGHV4-39P01824 125 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 WT1-ASQ06250 92 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 GAGE5Q13069 117 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 GAGE6Q13070 117 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 OR10X1Q8NGY0 326 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 FLYWCH2Q96CP2 140 aaKnown RBP8.75□□□□□ -1.01
CUX1-204ENST00000393824 RNF183Q96D59 192 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 RITA1Q96K30 269 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 TRGV9Q99603 122 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 OTORQ9NRC9 128 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 DSCAML1Q8TD84 2053 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 TRAV8-1A0A0A6YYK1 113 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 C8orf31Q8N9H6 132 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 OR4C13Q8NGP0 309 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 RAB1BQ9H0U4 201 aa8.75□□□□□ -1.01
CUX1-204ENST00000393824 F11RQ9Y624 299 aaKnown RBP8.75□□□□□ -1.01
CUX1-204ENST00000393824 CGB1A6NKQ9 187 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 TCTAP57738 103 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 ZMAT4Q9H898 229 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 LOC389332A0A1B0GUA5 103 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 D6R8Y8 96 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 TM4SF20Q53R12 229 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 FAM104BQ5XKR9 115 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 PRNTQ86SH4 94 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 ORMDL3Q8N138 153 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 PRELID3AQ96N28 172 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 CCL19Q99731 98 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 CHAC1Q9BUX1 264 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 MRPL20Q9BYC9 149 aaKnown RBP8.74□□□□□ -1.01
CUX1-204ENST00000393824 HHLA3Q9XRX5 114 aa8.74□□□□□ -1.01
CUX1-204ENST00000393824 ABCA2Q9BZC7 2435 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 WNK2Q9Y3S1 2297 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 FBLL1A6NHQ2 334 aaKnown RBP8.73□□□□□ -1.01
CUX1-204ENST00000393824 IGLL5B9A064 214 aa8.73□□□□□ -1.01
CUX1-204ENST00000393824 IGHV3-48P01763 117 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms