RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 C16orf54Q6UWD8 224 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 BORCS7Q96B45 105 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 ASCL2Q99929 193 aa12.03□□□□□ -0.48
CCDC40-202ENST00000374876 H3BUX3 64 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 CHEK1O14757 476 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 ATP6V0E1O15342 81 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 S100A7P31151 101 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 C15orf32Q32M92 178 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 TDRG1Q3Y452 100 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 LBHQ53QV2 105 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-202ENST00000374876 PRR31Q5SQ13 230 aa12.02□□□□□ -0.49
CCDC40-202ENST00000374876 FBN1P35555 2871 aaKnown RBP12.02□□□□□ -0.49
CCDC40-202ENST00000374876 SERTM2A0A1B0GWG4 89 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 LY6EQ16553 131 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 RNASEKQ6P5S7 137 aaKnown RBP12.01□□□□□ -0.49
CCDC40-202ENST00000374876 NIT1Q86X76 327 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 PIFOQ8TCI5 191 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 PAM16Q9Y3D7 125 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 ZNF785A8K8V0 405 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 CT45A10P0DMU9 189 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 GPR183P32249 361 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 RHOGP84095 191 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 KRTAP24-1Q3LI83 254 aa12.01□□□□□ -0.49
CCDC40-202ENST00000374876 HAX1O00165 279 aa12□□□□□ -0.49
CCDC40-202ENST00000374876 FOXA3P55318 350 aaPredicted RBP12□□□□□ -0.49
CCDC40-202ENST00000374876 C20orf144Q9BQM9 153 aa12□□□□□ -0.49
CCDC40-202ENST00000374876 IGHV3-35A0A0C4DH35 117 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 SH2D7A6NKC9 451 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-202ENST00000374876 M0R2Z0 102 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 C3orf79P0CE67 100 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 FAM162BQ5T6X4 162 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 Q8N976 141 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 ZNF502Q8TBZ5 544 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 A0A1B0GUT8 65 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 RNASE1P07998 156 aaKnown RBP11.99□□□□□ -0.49
CCDC40-202ENST00000374876 C8orf49Q96NF6 230 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 MDFIQ99750 246 aa11.99□□□□□ -0.49
CCDC40-202ENST00000374876 ZMAT5Q9UDW3 170 aaKnown RBP11.99□□□□□ -0.49
CCDC40-202ENST00000374876 IGHV3OR16-8A0A075B7F1 116 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 FAM181BA6NEQ2 426 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 APOHP02749 345 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-202ENST00000374876 CLEC3BP05452 202 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 CRIP1P50238 77 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 TMEM86BQ8N661 226 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-202ENST00000374876 C2orf88Q9BSF0 95 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 LOC102724200A0A096LPH7 203 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-202ENST00000374876 G3V318 75 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 RIGQ13278 110 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 KLK9Q2XQG4 91 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 ARL6IP6Q8N6S5 226 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 VPREB3Q9UKI3 123 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 KLK9Q9UKQ9 250 aa11.98□□□□□ -0.49
CCDC40-202ENST00000374876 IGKV2-40A0A087WW87 121 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-202ENST00000374876 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.97□□□□□ -0.49
CCDC40-202ENST00000374876 A0A1B0GV90 55 aa11.97□□□□□ -0.49
CCDC40-202ENST00000374876 IGKV2D-40P01614 121 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-202ENST00000374876 Q6AWC8 147 aa11.97□□□□□ -0.49
CCDC40-202ENST00000374876 ZNF705AQ6ZN79 300 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-202ENST00000374876 TMEM219Q86XT9 240 aa11.97□□□□□ -0.49
CCDC40-202ENST00000374876 C5orf56Q8N8D9 126 aa11.97□□□□□ -0.49
CCDC40-202ENST00000374876 MIEN1Q9BRT3 115 aa11.97□□□□□ -0.49
CCDC40-202ENST00000374876 SMAD5-AS1Q9Y6J3 95 aa11.97□□□□□ -0.49
CCDC40-202ENST00000374876 LINC01548A6NM66 108 aa11.96□□□□□ -0.49
CCDC40-202ENST00000374876 ARMS2P0C7Q2 107 aa11.96□□□□□ -0.49
CCDC40-202ENST00000374876 SAPCD1Q5SSQ6 148 aa11.96□□□□□ -0.49
CCDC40-202ENST00000374876 TMEM158Q8WZ71 300 aa11.96□□□□□ -0.49
CCDC40-202ENST00000374876 NDFIP1Q9BT67 221 aa11.96□□□□□ -0.49
CCDC40-202ENST00000374876 TPPP3Q9BW30 176 aa11.96□□□□□ -0.49
CCDC40-202ENST00000374876 FBLL1A6NHQ2 334 aaKnown RBP11.96□□□□□ -0.5
CCDC40-202ENST00000374876 RAB9AP51151 201 aa11.96□□□□□ -0.5
CCDC40-202ENST00000374876 RELQ04864 619 aaPredicted RBP11.96□□□□□ -0.5
CCDC40-202ENST00000374876 CLEC19AQ6UXS0 136 aa11.96□□□□□ -0.5
CCDC40-202ENST00000374876 EEF1AKMT3Q96AZ1 226 aa11.96□□□□□ -0.5
CCDC40-202ENST00000374876 A0A1B0GW15 77 aa11.95□□□□□ -0.5
CCDC40-202ENST00000374876 M0R143 59 aa11.95□□□□□ -0.5
CCDC40-202ENST00000374876 EREGO14944 169 aa11.95□□□□□ -0.5
CCDC40-202ENST00000374876 CHCHD1Q96BP2 118 aaKnown RBP11.95□□□□□ -0.5
CCDC40-202ENST00000374876 ZFAND3Q9H8U3 227 aa11.95□□□□□ -0.5
CCDC40-202ENST00000374876 TMEM189A5PLL7 270 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 M0QZ24 198 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 SH2D1AO60880 128 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 IGFL4Q6B9Z1 124 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 URB1-AS1Q96HZ7 61 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 CCDC140Q96MF4 163 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 MOB4Q9Y3A3 225 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 COL6A5A8TX70 2615 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 TRBV7-1A0A0A6YYK4 115 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 A6NDX4 124 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 BTF3P20290 206 aaKnown RBP11.94□□□□□ -0.5
CCDC40-202ENST00000374876 SPATA45Q537H7 98 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 PRR25Q96S07 402 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 SNHG12Q9BXW3 62 aa11.94□□□□□ -0.5
CCDC40-202ENST00000374876 BUB3O43684 328 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 EBLN2Q6P2I7 272 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 COX8CQ7Z4L0 72 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 LINC00469Q8N7U9 141 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 TMSB15BA0A087X1C1 80 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 LINC00614P0C842 121 aa11.93□□□□□ -0.5
CCDC40-202ENST00000374876 HLA-DMBP28068 263 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms