RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SMIM12Q96EX1 92 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 SORL1Q92673 2214 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 STAB1Q9NY15 2570 aa13.93□□□□□ -0.18
CLN3-206ENST00000360019 IZUMO1RA6ND01 250 aa13.93□□□□□ -0.18
CLN3-206ENST00000360019 SAP30O75446 220 aa13.93□□□□□ -0.18
CLN3-206ENST00000360019 F6UB75 175 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 ZNF705DP0CH99 300 aaPredicted RBP13.92□□□□□ -0.18
CLN3-206ENST00000360019 ZNF705BP0CI00 300 aaPredicted RBP13.92□□□□□ -0.18
CLN3-206ENST00000360019 TMEM183AQ8IXX5 376 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 SFRP2Q96HF1 295 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 AGPAT4-IT1Q9H0P7 198 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 ZFP30Q9Y2G7 519 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 COL6A5A8TX70 2615 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 FBLL1A6NHQ2 334 aaKnown RBP13.92□□□□□ -0.18
CLN3-206ENST00000360019 MT-ND4LP03901 98 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 SNRPD3P62318 126 aaKnown RBP13.92□□□□□ -0.18
CLN3-206ENST00000360019 SPATA3Q8NHX4 192 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 GPR61Q9BZJ8 451 aa13.92□□□□□ -0.18
CLN3-206ENST00000360019 TRAV2A0A0B4J234 112 aa13.91□□□□□ -0.18
CLN3-206ENST00000360019 PSMG4Q5JS54 123 aa13.91□□□□□ -0.18
CLN3-206ENST00000360019 C9orf47Q6ZRZ4 202 aa13.91□□□□□ -0.18
CLN3-206ENST00000360019 RNASE7Q9H1E1 156 aaKnown RBP13.91□□□□□ -0.18
CLN3-206ENST00000360019 TRAV25A0A0B4J276 109 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 PRR27Q6MZM9 219 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 LINC00322Q6ZN03 302 aaPredicted RBP13.9□□□□□ -0.18
CLN3-206ENST00000360019 C8orf49Q96NF6 230 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 PRR25Q96S07 402 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 SPAG8Q99932 426 aaPredicted RBP13.9□□□□□ -0.18
CLN3-206ENST00000360019 ZNF747Q9BV97 191 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 IGLV1-51P01701 117 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 OR8A1Q8NGG7 326 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 ZC2HC1AQ96GY0 325 aa13.9□□□□□ -0.18
CLN3-206ENST00000360019 ZNF256Q9Y2P7 627 aaPredicted RBP13.9□□□□□ -0.18
CLN3-206ENST00000360019 NPIPB6E9PJ23 425 aa13.89□□□□□ -0.19
CLN3-206ENST00000360019 ERVFC1-1P60608 527 aa13.89□□□□□ -0.19
CLN3-206ENST00000360019 TMEM78Q5T7P6 136 aa13.89□□□□□ -0.19
CLN3-206ENST00000360019 ANAPC16Q96DE5 110 aa13.89□□□□□ -0.19
CLN3-206ENST00000360019 CTDSP1Q9GZU7 261 aa13.89□□□□□ -0.19
CLN3-206ENST00000360019 TMEM242Q9NWH2 141 aa13.89□□□□□ -0.19
CLN3-206ENST00000360019 ZNF138P52744 262 aa13.88□□□□□ -0.19
CLN3-206ENST00000360019 HIST1H1AQ02539 215 aaPredicted RBP13.88□□□□□ -0.19
CLN3-206ENST00000360019 IBA57Q5T440 356 aaKnown RBP13.88□□□□□ -0.19
CLN3-206ENST00000360019 GDF5OSQ5U4N7 250 aa13.88□□□□□ -0.19
CLN3-206ENST00000360019 OR10G8Q8NGN5 311 aa13.88□□□□□ -0.19
CLN3-206ENST00000360019 OR10J6PQ8NGY7 276 aa13.88□□□□□ -0.19
CLN3-206ENST00000360019 SMCO4Q9NRQ5 59 aa13.88□□□□□ -0.19
CLN3-206ENST00000360019 ZNF492Q9P255 531 aa13.88□□□□□ -0.19
CLN3-206ENST00000360019 H7BYZ3 331 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 SAPCD1Q5SSQ6 148 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 COX8CQ7Z4L0 72 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 NOTCH3Q9UM47 2321 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 OR4C46A6NHA9 309 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 CRIP1P50238 77 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 FAM231DQ6ZW35 169 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 OSTCQ9NRP0 149 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 PPP1R14DQ9NXH3 145 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 V9GYV3 84 aa13.87□□□□□ -0.19
CLN3-206ENST00000360019 C19orf71A6NCJ1 209 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 PPP1R2P9O14990 202 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 CT45A10P0DMU9 189 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 NUDT10Q8NFP7 164 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 TMEM158Q8WZ71 300 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 NUDT11Q96G61 164 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 LINC00477Q96M19 166 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 NDFIP1Q9BT67 221 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 TUBA4BQ9H853 241 aa13.86□□□□□ -0.19
CLN3-206ENST00000360019 CD33P20138 364 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 DEFB131AP59861 70 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 C3orf56Q8N813 242 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 C15orf54Q8N8G6 183 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 MAP6D1Q9H9H5 199 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 A0A0J9YX75 114 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 BIN3Q9NQY0 253 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 URGCP-MRPS24S4R325 110 aa13.85□□□□□ -0.19
CLN3-206ENST00000360019 CXorf65A6NEN9 183 aa13.84□□□□□ -0.19
CLN3-206ENST00000360019 ZNF80P51504 273 aaPredicted RBP13.84□□□□□ -0.19
CLN3-206ENST00000360019 C12orf54Q6X4T0 127 aa13.84□□□□□ -0.19
CLN3-206ENST00000360019 OR2K2Q8NGT1 345 aa13.84□□□□□ -0.19
CLN3-206ENST00000360019 FAM19A4Q96LR4 140 aa13.84□□□□□ -0.19
CLN3-206ENST00000360019 YPEL4Q96NS1 127 aa13.84□□□□□ -0.19
CLN3-206ENST00000360019 SAV1Q9H4B6 383 aaPredicted RBP13.84□□□□□ -0.19
CLN3-206ENST00000360019 ZNF124Q15973 351 aa13.83□□□□□ -0.2
CLN3-206ENST00000360019 ODF3L2Q3SX64 289 aa13.83□□□□□ -0.2
CLN3-206ENST00000360019 FOXI2Q6ZQN5 318 aa13.83□□□□□ -0.2
CLN3-206ENST00000360019 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.83□□□□□ -0.2
CLN3-206ENST00000360019 AGRNO00468 2067 aa13.83□□□□□ -0.2
CLN3-206ENST00000360019 CA1P00915 261 aaPredicted RBP13.83□□□□□ -0.2
CLN3-206ENST00000360019 SMUG1Q53HV7 270 aa13.83□□□□□ -0.2
CLN3-206ENST00000360019 LENEPQ9Y5L5 61 aa13.83□□□□□ -0.2
CLN3-206ENST00000360019 ZNF705GA8MUZ8 300 aaPredicted RBP13.82□□□□□ -0.2
CLN3-206ENST00000360019 ELOBQ15370 118 aa13.82□□□□□ -0.2
CLN3-206ENST00000360019 EBLN2Q6P2I7 272 aa13.82□□□□□ -0.2
CLN3-206ENST00000360019 SHISA2Q6UWI4 295 aa13.82□□□□□ -0.2
CLN3-206ENST00000360019 GATCO43716 136 aaKnown RBP13.81□□□□□ -0.2
CLN3-206ENST00000360019 P01737 135 aa13.81□□□□□ -0.2
CLN3-206ENST00000360019 PFN1P07737 140 aaKnown RBP13.81□□□□□ -0.2
CLN3-206ENST00000360019 PRR9Q5T870 116 aa13.81□□□□□ -0.2
CLN3-206ENST00000360019 ZFAND2AQ8N6M9 145 aa13.81□□□□□ -0.2
CLN3-206ENST00000360019 KNCNA6PVL3 124 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 SH2D1AO60880 128 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms