RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MAP1LC3CQ9BXW4 147 aa16.81■□□□□ 0.28
SHMT1-202ENST00000352886 IGHV3-49A0A0A0MS15 119 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 TSPOP30536 169 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 RPS20P60866 119 aaKnown RBP16.8■□□□□ 0.28
SHMT1-202ENST00000352886 FAM104BQ5XKR9 115 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 FER1L6-AS1Q8NA97 138 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 LINC00527Q9UJ94 153 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 HSPB8Q9UJY1 196 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 TRAV40A0A0B4J280 105 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 IGHV1-69DA0A0B4J2H0 117 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 IGHV4-61A0A0C4DH41 118 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 ZNF207O43670 478 aaKnown RBP16.8■□□□□ 0.28
SHMT1-202ENST00000352886 IGHV1-69P01742 117 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 FA2HQ7L5A8 372 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 LAMTOR2Q9Y2Q5 125 aa16.8■□□□□ 0.28
SHMT1-202ENST00000352886 SLC50A1Q9BRV3 221 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 PIMREGQ9BSJ6 248 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 TRAV41A0A0B4J266 112 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 ATP5G2Q06055 141 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 COTL1Q14019 142 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 METTL26Q96S19 204 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 COL12A1Q99715 3063 aa16.79■□□□□ 0.28
SHMT1-202ENST00000352886 H0Y8G0 127 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 ORM1P02763 201 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 IFI27P40305 119 aaPredicted RBP16.78■□□□□ 0.28
SHMT1-202ENST00000352886 ZNF575Q86XF7 245 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 PIFOQ8TCI5 191 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 MCRIP2Q9BUT9 160 aaKnown RBP16.78■□□□□ 0.28
SHMT1-202ENST00000352886 PKD1L2Q7Z442 2459 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 IGLC6P0CF74 106 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 RBX1P62877 108 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 TWIST1Q15672 202 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 RNASE8Q8TDE3 154 aaKnown RBP16.78■□□□□ 0.28
SHMT1-202ENST00000352886 TMEM191AQ9H0A3 160 aa16.78■□□□□ 0.28
SHMT1-202ENST00000352886 FABP5P3A8MUU1 101 aa16.77■□□□□ 0.28
SHMT1-202ENST00000352886 PET117Q6UWS5 81 aa16.77■□□□□ 0.28
SHMT1-202ENST00000352886 ORMDL3Q8N138 153 aa16.77■□□□□ 0.28
SHMT1-202ENST00000352886 PRELID3AQ96N28 172 aa16.77■□□□□ 0.28
SHMT1-202ENST00000352886 CCL19Q99731 98 aa16.77■□□□□ 0.28
SHMT1-202ENST00000352886 U3KQK5 164 aa16.77■□□□□ 0.28
SHMT1-202ENST00000352886 LOC389332A0A1B0GUA5 103 aa16.77■□□□□ 0.27
SHMT1-202ENST00000352886 FAM106AQ4KMX7 169 aa16.77■□□□□ 0.27
SHMT1-202ENST00000352886 hDV102S1A0JD36 115 aa16.76■□□□□ 0.27
SHMT1-202ENST00000352886 RBAKDNA6NC62 111 aa16.76■□□□□ 0.27
SHMT1-202ENST00000352886 MRPL51Q4U2R6 128 aaKnown RBP16.76■□□□□ 0.27
SHMT1-202ENST00000352886 IL17RELQ6ZVW7 336 aa16.76■□□□□ 0.27
SHMT1-202ENST00000352886 C19orf54Q5BKX5 351 aa16.76■□□□□ 0.27
SHMT1-202ENST00000352886 SIGLEC8Q9NYZ4 499 aa16.76■□□□□ 0.27
SHMT1-202ENST00000352886 MRPS16Q9Y3D3 137 aaKnown RBP16.76■□□□□ 0.27
SHMT1-202ENST00000352886 SRSF2Q01130 221 aaKnown RBP16.75■□□□□ 0.27
SHMT1-202ENST00000352886 OR10AG1Q8NH19 301 aa16.75■□□□□ 0.27
SHMT1-202ENST00000352886 STPG4Q8N801 248 aa16.75■□□□□ 0.27
SHMT1-202ENST00000352886 C10orf105Q8TEF2 133 aa16.75■□□□□ 0.27
SHMT1-202ENST00000352886 TRAV8-2A0A0B4J237 113 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 TRGV3P03979 118 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 C8orf86Q6ZUL3 223 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 ZNF747Q9BV97 191 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 ST20Q9HBF5 79 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 FAM223BA6NKX1 122 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 IGHV4-38-2P0DP08 117 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 LOXL1Q08397 574 aaPredicted RBP16.74■□□□□ 0.27
SHMT1-202ENST00000352886 FAM223AQ8IWN6 122 aa16.74■□□□□ 0.27
SHMT1-202ENST00000352886 PSMG3-AS1Q96PY0 264 aa16.73■□□□□ 0.27
SHMT1-202ENST00000352886 PMCHL2Q9BQD1 86 aa16.73■□□□□ 0.27
SHMT1-202ENST00000352886 AGPAT4-IT1Q9H0P7 198 aa16.73■□□□□ 0.27
SHMT1-202ENST00000352886 MSRB1Q9NZV6 116 aa16.73■□□□□ 0.27
SHMT1-202ENST00000352886 U3KQE9 123 aa16.73■□□□□ 0.27
SHMT1-202ENST00000352886 CKS2P33552 79 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 CRIP2P52943 208 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-202ENST00000352886 MEGF9Q9H1U4 602 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 TP73-AS1Q9UF72 201 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 A0A096LNJ9 63 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 SMKR1H3BMG3 65 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 CCL25O15444 150 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 HINT1P49773 126 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-202ENST00000352886 LINC01559Q495D7 138 aa16.72■□□□□ 0.27
SHMT1-202ENST00000352886 HSBP1L1C9JCN9 74 aa16.71■□□□□ 0.27
SHMT1-202ENST00000352886 LY6EQ16553 131 aa16.71■□□□□ 0.27
SHMT1-202ENST00000352886 LINC01545Q5VT33 79 aa16.71■□□□□ 0.27
SHMT1-202ENST00000352886 CLEC2AQ6UVW9 174 aa16.71■□□□□ 0.27
SHMT1-202ENST00000352886 NCR2O95944 276 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 ARL3P36405 182 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 TMEM78Q5T7P6 136 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 ATP6V0BQ99437 205 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 CNFNQ9BYD5 112 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 NPYP01303 97 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 PTTG1IPP53801 180 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 ATP5J2P56134 94 aa16.7■□□□□ 0.26
SHMT1-202ENST00000352886 IGHV4-30-2A0A087WSY4 118 aa16.69■□□□□ 0.26
SHMT1-202ENST00000352886 NDUFS8O00217 210 aa16.69■□□□□ 0.26
SHMT1-202ENST00000352886 PPIFP30405 207 aaKnown RBP16.69■□□□□ 0.26
SHMT1-202ENST00000352886 MRPL53Q96EL3 112 aaKnown RBP16.69■□□□□ 0.26
SHMT1-202ENST00000352886 TRBV12-3P01733 135 aa16.69■□□□□ 0.26
SHMT1-202ENST00000352886 IGKV3D-20A0A0C4DH25 116 aa16.68■□□□□ 0.26
SHMT1-202ENST00000352886 IGF1P05019 195 aa16.68■□□□□ 0.26
SHMT1-202ENST00000352886 ORAOV1Q8WV07 137 aa16.68■□□□□ 0.26
SHMT1-202ENST00000352886 H3BUX3 64 aa16.68■□□□□ 0.26
SHMT1-202ENST00000352886 RNF185Q96GF1 192 aa16.68■□□□□ 0.26
SHMT1-202ENST00000352886 CFAP46Q8IYW2 2715 aa16.68■□□□□ 0.26
SHMT1-202ENST00000352886 FXYD7P58549 80 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms