RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 OR1N2Q8NGR9 330 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 RELNP78509 3460 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 GOSR1O95249 250 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 PAX8Q06710 450 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 ANKRD39Q53RE8 183 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 IFI27L1Q96BM0 104 aa14.5□□□□□ -0.09
CPSF3-201ENST00000238112 ATP6V0E1O15342 81 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 BUB3O43684 328 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 UCNP55089 124 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 PIP4P2Q8N4L2 257 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 ZFAND3Q9H8U3 227 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 K7EP13 123 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 MAP1LC3AQ9H492 121 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 MSRB1Q9NZV6 116 aa14.49□□□□□ -0.09
CPSF3-201ENST00000238112 PRAC2D3DTV9 90 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 PPBPP02775 128 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 UBE2E1P51965 193 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 PRSS57Q6UWY2 283 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 ZNF575Q86XF7 245 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 RNF182Q8N6D2 247 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 RNASE8Q8TDE3 154 aaKnown RBP14.48□□□□□ -0.09
CPSF3-201ENST00000238112 SLC50A1Q9BRV3 221 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 CNFNQ9BYD5 112 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 RNF185Q96GF1 192 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 RAXQ9Y2V3 346 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 CSMD1Q96PZ7 3565 aa14.48□□□□□ -0.09
CPSF3-201ENST00000238112 IGHV3-66A0A0C4DH42 116 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 RBAKDNA6NC62 111 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 NDUFS7O75251 213 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 FGF6P10767 208 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 LINC01559Q495D7 138 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 TMEM97Q5BJF2 176 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 IL17RELQ6ZVW7 336 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 CLEC19AQ6UXS0 136 aa14.47□□□□□ -0.09
CPSF3-201ENST00000238112 SEC11AP67812 179 aa14.46□□□□□ -0.09
CPSF3-201ENST00000238112 FOXE3Q13461 319 aa14.46□□□□□ -0.09
CPSF3-201ENST00000238112 SAA4P35542 130 aa14.46□□□□□ -0.1
CPSF3-201ENST00000238112 AMMECR1LQ6DCA0 310 aa14.46□□□□□ -0.1
CPSF3-201ENST00000238112 HRNRQ86YZ3 2850 aaPredicted RBP14.45□□□□□ -0.1
CPSF3-201ENST00000238112 TCTAP57738 103 aa14.45□□□□□ -0.1
CPSF3-201ENST00000238112 EEF1AKMT3Q96AZ1 226 aa14.45□□□□□ -0.1
CPSF3-201ENST00000238112 CCDC140Q96MF4 163 aa14.45□□□□□ -0.1
CPSF3-201ENST00000238112 PEF1Q9UBV8 284 aaKnown RBP14.45□□□□□ -0.1
CPSF3-201ENST00000238112 IGHV3OR16-13A0A075B7E8 117 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 IGHV3-74A0A0B4J1X5 117 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 G3V318 75 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 KLK9Q2XQG4 91 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 WFDC3Q8IUB2 231 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 BOD1L2Q8IYS8 172 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 NPFFR1Q9GZQ6 430 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 KLK9Q9UKQ9 250 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 WNK2Q9Y3S1 2297 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 NBASA2RRP1 2371 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 A0A1W2PPR1 153 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 CLPSL1A2RUU4 121 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 C7orf71A4D174 169 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 PPIFP30405 207 aaKnown RBP14.44□□□□□ -0.1
CPSF3-201ENST00000238112 AJUBAQ96IF1 538 aa14.44□□□□□ -0.1
CPSF3-201ENST00000238112 NXT2Q9NPJ8 142 aaKnown RBP14.44□□□□□ -0.1
CPSF3-201ENST00000238112 SMAD7O15105 426 aaKnown RBP14.43□□□□□ -0.1
CPSF3-201ENST00000238112 TNFRSF6BO95407 300 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 C18orf15Q96N68 181 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 PSMG3-AS1Q96PY0 264 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 METTL26Q96S19 204 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 UBTD1Q9HAC8 227 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 LEPP41159 167 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 TMEM78Q5T7P6 136 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 OR9G4Q8NGQ1 327 aa14.43□□□□□ -0.1
CPSF3-201ENST00000238112 TRBV7-1A0A0A6YYK4 115 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 A1L4Q6 167 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 GAS8-AS1O95177 125 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 EVI2AP22794 236 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 AGPAT4-IT1Q9H0P7 198 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 IGHV3-49A0A0A0MS15 119 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 LINC01546A6NGU7 62 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 NMUP48645 174 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 RBX1P62877 108 aa14.42□□□□□ -0.1
CPSF3-201ENST00000238112 LINC01548A6NM66 108 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 FCER1GP30273 86 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 UQCRFS1P47985 274 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 EFNA4P52798 201 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 DKK2Q9UBU2 259 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 TRAV8-6A0A0B4J262 113 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 IGKV3D-20A0A0C4DH25 116 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 CENPVL3A0A0U1RRI6 287 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 A6NDN8 102 aa14.41□□□□□ -0.1
CPSF3-201ENST00000238112 ZNF207O43670 478 aaKnown RBP14.41□□□□□ -0.1
CPSF3-201ENST00000238112 SIVA1O15304 175 aa14.4□□□□□ -0.1
CPSF3-201ENST00000238112 HSD52Q0P140 79 aa14.4□□□□□ -0.1
CPSF3-201ENST00000238112 C8orf86Q6ZUL3 223 aa14.4□□□□□ -0.1
CPSF3-201ENST00000238112 MRPL53Q96EL3 112 aaKnown RBP14.4□□□□□ -0.1
CPSF3-201ENST00000238112 TRAV8-2A0A0B4J237 113 aa14.4□□□□□ -0.11
CPSF3-201ENST00000238112 NPFFO15130 113 aa14.4□□□□□ -0.11
CPSF3-201ENST00000238112 SMIM15Q7Z3B0 74 aa14.4□□□□□ -0.11
CPSF3-201ENST00000238112 OR4X2Q8NGF9 303 aa14.39□□□□□ -0.11
CPSF3-201ENST00000238112 COL25A1Q9BXS0 654 aaPredicted RBP14.39□□□□□ -0.11
CPSF3-201ENST00000238112 BPESC1Q9GZL8 116 aa14.39□□□□□ -0.11
CPSF3-201ENST00000238112 GATA1P15976 413 aaPredicted RBP14.38□□□□□ -0.11
CPSF3-201ENST00000238112 PCP4P48539 62 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms