RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PPP1R2P9O14990 202 aa12.82□□□□□ -0.36
CLN3-252ENST00000636907 ERVFC1-1P60608 527 aa12.82□□□□□ -0.36
CLN3-252ENST00000636907 RNF182Q8N6D2 247 aa12.82□□□□□ -0.36
CLN3-252ENST00000636907 ARL6IP6Q8N6S5 226 aa12.82□□□□□ -0.36
CLN3-252ENST00000636907 TRBV6-1A0A0K0K1D8 114 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 ZNF705FA8MVS1 300 aaPredicted RBP12.81□□□□□ -0.36
CLN3-252ENST00000636907 A8MWP6 167 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 LGALS9O00182 355 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 NDUFA7O95182 113 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 CD28P10747 220 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 PSG3Q16557 428 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 PRNTQ86SH4 94 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 C11orf44Q8N8P7 122 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 KLHL30-AS1Q8NEE0 82 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 OR11H1Q8NG94 326 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 MLST8Q9BVC4 326 aa12.81□□□□□ -0.36
CLN3-252ENST00000636907 RNASE7Q9H1E1 156 aaKnown RBP12.81□□□□□ -0.36
CLN3-252ENST00000636907 TGIF2-C20orf24A0A0A6YYL0 155 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 LINC01619G3V211 115 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 CXCL1P09341 107 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 SLURP1P55000 103 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 FLI1Q01543 452 aaPredicted RBP12.8□□□□□ -0.36
CLN3-252ENST00000636907 LCN12Q6JVE5 192 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 C1QL4Q86Z23 238 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 SMIM12Q96EX1 92 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 PSG8Q9UQ74 426 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 SELENOKQ9Y6D0 94 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 IGKV2-40A0A087WW87 121 aaPredicted RBP12.8□□□□□ -0.36
CLN3-252ENST00000636907 SERTM2A0A1B0GWG4 89 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 HAX1O00165 279 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 TCF21O43680 179 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 IGKV2D-40P01614 121 aaPredicted RBP12.8□□□□□ -0.36
CLN3-252ENST00000636907 PFN1P07737 140 aaKnown RBP12.8□□□□□ -0.36
CLN3-252ENST00000636907 KLF5Q13887 457 aaPredicted RBP12.8□□□□□ -0.36
CLN3-252ENST00000636907 ASCL2Q99929 193 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 OSTCQ9NRP0 149 aa12.8□□□□□ -0.36
CLN3-252ENST00000636907 NSD1Q96L73 2696 aaPredicted RBP12.79□□□□□ -0.36
CLN3-252ENST00000636907 CRLF1O75462 422 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 RPL11P62913 178 aaKnown RBP12.79□□□□□ -0.36
CLN3-252ENST00000636907 SRSF2Q01130 221 aaKnown RBP12.79□□□□□ -0.36
CLN3-252ENST00000636907 OR1N2Q8NGR9 330 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 WFDC12Q8WWY7 111 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 DPF1Q92782 380 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 C16orf92Q96LL3 132 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 DUX3Q96PT4 197 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 V9GYV3 84 aa12.79□□□□□ -0.36
CLN3-252ENST00000636907 PRAC2D3DTV9 90 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 SOCS3O14543 225 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 RAB5AP20339 215 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 IBA57Q5T440 356 aaKnown RBP12.78□□□□□ -0.36
CLN3-252ENST00000636907 PRR27Q6MZM9 219 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 TCF24Q7RTU0 167 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 TMEM183AQ8IXX5 376 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 NRN1Q9NPD7 142 aa12.78□□□□□ -0.36
CLN3-252ENST00000636907 S100PP25815 95 aa12.77□□□□□ -0.36
CLN3-252ENST00000636907 BMI1P35226 326 aa12.77□□□□□ -0.36
CLN3-252ENST00000636907 FAM231DQ6ZW35 169 aa12.77□□□□□ -0.36
CLN3-252ENST00000636907 CITED2Q99967 270 aaPredicted RBP12.77□□□□□ -0.36
CLN3-252ENST00000636907 RNF114Q9Y508 228 aa12.77□□□□□ -0.36
CLN3-252ENST00000636907 FN1P02751 2386 aaKnown RBP12.77□□□□□ -0.37
CLN3-252ENST00000636907 IGKV3-7A0A075B6H7 116 aa12.77□□□□□ -0.37
CLN3-252ENST00000636907 C2orf70A6NJV1 201 aa12.77□□□□□ -0.37
CLN3-252ENST00000636907 MRPL53Q96EL3 112 aaKnown RBP12.77□□□□□ -0.37
CLN3-252ENST00000636907 C20orf173Q96LM9 149 aa12.77□□□□□ -0.37
CLN3-252ENST00000636907 IMMP2LQ96T52 175 aa12.77□□□□□ -0.37
CLN3-252ENST00000636907 VGLL1Q99990 258 aa12.77□□□□□ -0.37
CLN3-252ENST00000636907 ZFP30Q9Y2G7 519 aa12.77□□□□□ -0.37
CLN3-252ENST00000636907 TRBV24-1A0A075B6N3 115 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 A0A1W2PRX2 142 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 FAM3BP58499 235 aaPredicted RBP12.76□□□□□ -0.37
CLN3-252ENST00000636907 KCNIP4Q6PIL6 250 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 LINC00322Q6ZN03 302 aaPredicted RBP12.76□□□□□ -0.37
CLN3-252ENST00000636907 NUDT10Q8NFP7 164 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 NUDT11Q96G61 164 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 CLEC5AQ9NY25 188 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 IL36BQ9NZH7 164 aa12.76□□□□□ -0.37
CLN3-252ENST00000636907 A0A1W2PPQ1 181 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 CBLN1P23435 193 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 PROK1P58294 105 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 FOXL1Q12952 345 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 ZC2HC1AQ96GY0 325 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 FAM210BQ96KR6 192 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 PYGO2Q9BRQ0 406 aa12.75□□□□□ -0.37
CLN3-252ENST00000636907 TSSC4Q9Y5U2 329 aaPredicted RBP12.75□□□□□ -0.37
CLN3-252ENST00000636907 FBLL1A6NHQ2 334 aaKnown RBP12.74□□□□□ -0.37
CLN3-252ENST00000636907 ZNF705GA8MUZ8 300 aaPredicted RBP12.74□□□□□ -0.37
CLN3-252ENST00000636907 FOLR2P14207 255 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 ERCC8Q13216 396 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 ADAMTSL5Q6ZMM2 481 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 DLX4Q92988 240 aaPredicted RBP12.74□□□□□ -0.37
CLN3-252ENST00000636907 RAX2Q96IS3 184 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 C8orf49Q96NF6 230 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 BIN3Q9NQY0 253 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 ZNF492Q9P255 531 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 BAHCC1Q9P281 2608 aa12.74□□□□□ -0.37
CLN3-252ENST00000636907 RBAKDNA6NC62 111 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 GATCO43716 136 aaKnown RBP12.73□□□□□ -0.37
CLN3-252ENST00000636907 Q8TAT8 98 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 MLXQ9UH92 298 aa12.73□□□□□ -0.37
CLN3-252ENST00000636907 C19orf71A6NCJ1 209 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms