RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MSMPQ1L6U9 139 aa8.82□□□□□ -1
CLN3-244ENST00000636147 TMEM158Q8WZ71 300 aa8.82□□□□□ -1
CLN3-244ENST00000636147 MBD6Q96DN6 1003 aa8.82□□□□□ -1
CLN3-244ENST00000636147 TRAV40A0A0B4J280 105 aa8.82□□□□□ -1
CLN3-244ENST00000636147 C10orf142B7Z368 130 aa8.82□□□□□ -1
CLN3-244ENST00000636147 NPYP01303 97 aa8.82□□□□□ -1
CLN3-244ENST00000636147 BSPH1Q075Z2 132 aa8.82□□□□□ -1
CLN3-244ENST00000636147 LINC01545Q5VT33 79 aa8.82□□□□□ -1
CLN3-244ENST00000636147 TMEM75Q8N9X5 138 aa8.82□□□□□ -1
CLN3-244ENST00000636147 CEACAM3P40198 252 aa8.82□□□□□ -1
CLN3-244ENST00000636147 MRPL51Q4U2R6 128 aaKnown RBP8.82□□□□□ -1
CLN3-244ENST00000636147 FAM104BQ5XKR9 115 aa8.82□□□□□ -1
CLN3-244ENST00000636147 ZNF474Q6S9Z5 364 aaPredicted RBP8.82□□□□□ -1
CLN3-244ENST00000636147 FRYQ5TBA9 3013 aa8.82□□□□□ -1
CLN3-244ENST00000636147 MYO15AQ9UKN7 3530 aa8.82□□□□□ -1
CLN3-244ENST00000636147 LTAP01374 205 aa8.81□□□□□ -1
CLN3-244ENST00000636147 FTH1P19P0C7X4 201 aa8.81□□□□□ -1
CLN3-244ENST00000636147 SH2D6Q7Z4S9 175 aa8.81□□□□□ -1
CLN3-244ENST00000636147 FAM90A27PA6NNH2 459 aa8.81□□□□□ -1
CLN3-244ENST00000636147 CKS1BP61024 79 aa8.81□□□□□ -1
CLN3-244ENST00000636147 SIGLEC9Q9Y336 463 aa8.81□□□□□ -1
CLN3-244ENST00000636147 MUC6Q6W4X9 2439 aa8.81□□□□□ -1
CLN3-244ENST00000636147 FABP5P3A8MUU1 101 aa8.81□□□□□ -1
CLN3-244ENST00000636147 ATP5LO75964 103 aa8.81□□□□□ -1
CLN3-244ENST00000636147 RITA1Q96K30 269 aa8.81□□□□□ -1
CLN3-244ENST00000636147 JMJD8Q96S16 334 aa8.81□□□□□ -1
CLN3-244ENST00000636147 C21orf62Q9NYP8 219 aa8.81□□□□□ -1
CLN3-244ENST00000636147 IGFBPL1Q8WX77 278 aa8.8□□□□□ -1
CLN3-244ENST00000636147 ARPC1AQ92747 370 aa8.8□□□□□ -1
CLN3-244ENST00000636147 SCGB3A1Q96QR1 104 aa8.8□□□□□ -1
CLN3-244ENST00000636147 BEX4Q9NWD9 120 aaPredicted RBP8.8□□□□□ -1
CLN3-244ENST00000636147 A0A1B0GXF2 115 aa8.8□□□□□ -1
CLN3-244ENST00000636147 TIMM23O14925 209 aa8.8□□□□□ -1
CLN3-244ENST00000636147 RAXQ9Y2V3 346 aa8.8□□□□□ -1
CLN3-244ENST00000636147 TNRC6AQ8NDV7 1962 aaKnown RBP8.8□□□□□ -1
CLN3-244ENST00000636147 TMEM8BA6NDV4 472 aa8.8□□□□□ -1
CLN3-244ENST00000636147 FRYLO94915 3013 aa8.8□□□□□ -1
CLN3-244ENST00000636147 TMEM238LA0A1B0GVL6 79 aa8.79□□□□□ -1
CLN3-244ENST00000636147 A6NJY4 79 aa8.79□□□□□ -1
CLN3-244ENST00000636147 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.79□□□□□ -1
CLN3-244ENST00000636147 NDUFS7O75251 213 aa8.79□□□□□ -1
CLN3-244ENST00000636147 IGHV1-8P0DP01 117 aa8.79□□□□□ -1
CLN3-244ENST00000636147 FXYD2P54710 66 aa8.79□□□□□ -1
CLN3-244ENST00000636147 LGALS9BQ3B8N2 356 aa8.79□□□□□ -1
CLN3-244ENST00000636147 LGALS9CQ6DKI2 356 aa8.79□□□□□ -1
CLN3-244ENST00000636147 NXT2Q9NPJ8 142 aaKnown RBP8.79□□□□□ -1
CLN3-244ENST00000636147 TRBV19A0A075B6N1 114 aa8.79□□□□□ -1
CLN3-244ENST00000636147 LYRM7Q5U5X0 104 aa8.79□□□□□ -1
CLN3-244ENST00000636147 ZNF833PQ6ZTB9 187 aa8.79□□□□□ -1
CLN3-244ENST00000636147 TLN1Q9Y490 2541 aaKnown RBP8.79□□□□□ -1
CLN3-244ENST00000636147 CD3EP07766 207 aa8.79□□□□□ -1
CLN3-244ENST00000636147 NPFFR1Q9GZQ6 430 aa8.79□□□□□ -1
CLN3-244ENST00000636147 RAB1BQ9H0U4 201 aa8.79□□□□□ -1
CLN3-244ENST00000636147 GAGE12HA6NDE8 117 aa8.78□□□□□ -1
CLN3-244ENST00000636147 GATA1P15976 413 aaPredicted RBP8.78□□□□□ -1
CLN3-244ENST00000636147 WFDC2Q14508 124 aa8.78□□□□□ -1
CLN3-244ENST00000636147 NPIPB6E9PJ23 425 aa8.78□□□□□ -1
CLN3-244ENST00000636147 URB1-AS1Q96HZ7 61 aa8.78□□□□□ -1
CLN3-244ENST00000636147 C16orf92Q96LL3 132 aa8.78□□□□□ -1
CLN3-244ENST00000636147 VGLL1Q99990 258 aa8.78□□□□□ -1
CLN3-244ENST00000636147 MSRB1Q9NZV6 116 aa8.78□□□□□ -1
CLN3-244ENST00000636147 PHLDA3Q9Y5J5 127 aa8.78□□□□□ -1
CLN3-244ENST00000636147 EXPH5Q8NEV8 1989 aa8.78□□□□□ -1
CLN3-244ENST00000636147 IGHV1-3A0A0C4DH29 117 aa8.78□□□□□ -1
CLN3-244ENST00000636147 TNFRSF6BO95407 300 aa8.78□□□□□ -1
CLN3-244ENST00000636147 EMP1P54849 157 aa8.78□□□□□ -1
CLN3-244ENST00000636147 HERVK_113P61574 105 aa8.78□□□□□ -1
CLN3-244ENST00000636147 ERCC8Q13216 396 aa8.78□□□□□ -1
CLN3-244ENST00000636147 TMEM170BQ5T4T1 132 aa8.78□□□□□ -1
CLN3-244ENST00000636147 THAP8Q8NA92 274 aa8.78□□□□□ -1
CLN3-244ENST00000636147 HOXA3O43365 443 aaPredicted RBP8.77□□□□□ -1
CLN3-244ENST00000636147 GP9P14770 177 aa8.77□□□□□ -1
CLN3-244ENST00000636147 CD300EQ496F6 205 aaPredicted RBP8.77□□□□□ -1
CLN3-244ENST00000636147 TET2Q6N021 2002 aaPredicted RBP8.77□□□□□ -1.01
CLN3-244ENST00000636147 SORL1Q92673 2214 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 IGKV1D-37A0A075B6S9 117 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 NDUFS8O00217 210 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 IGLV1-44P01699 117 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 PRSS2P07478 247 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 DLX6P56179 175 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 RBPJQ06330 500 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 PVRIGQ6DKI7 326 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 SHANK2-AS3Q9BTD1 123 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 PGPEP1Q9NXJ5 209 aa8.77□□□□□ -1.01
CLN3-244ENST00000636147 MRPL35Q9NZE8 188 aaKnown RBP8.77□□□□□ -1.01
CLN3-244ENST00000636147 FREM2Q5SZK8 3169 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 ZNF815PA8K554 130 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 G3V4G9 280 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 TMEM178BH3BS89 294 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 HLA-DMBP28068 263 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 NCKAP5O14513 1909 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 TRAV26-2A0A0B4J265 109 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 PSMB11A5LHX3 300 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 DPM3Q9P2X0 92 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 KLF12Q9Y4X4 402 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 PIEZO1Q92508 2521 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 C19orf71A6NCJ1 209 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 HTN1P15515 57 aa8.76□□□□□ -1.01
CLN3-244ENST00000636147 CSPG4Q6UVK1 2322 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms