RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TRAV5A0A0B4J249 113 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 DUXBA0A1W2PPF3 345 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 SNURFLB1AK76 121 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 H3BQ15 152 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 SCGB1D2O95969 90 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 CT45A10P0DMU9 189 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 SLC25A6P12236 298 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 BTF3P20290 206 aaKnown RBP5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 RPP30P78346 268 aaKnown RBP5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 ERCC8Q13216 396 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 Q6ZQT7 251 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 ZNF493Q6ZR52 646 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 LINC00305Q7Z4B0 112 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 LYPD1Q8N2G4 141 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 OR10J6PQ8NGY7 276 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 MCFD2Q8NI22 146 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 SLIRPQ9GZT3 109 aaKnown RBP5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 ZNF331Q9NQX6 463 aaPredicted RBP5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 CCDC59Q9P031 241 aaKnown RBP5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 RSL24D1Q9UHA3 163 aaKnown RBP5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 FLVCR2Q9UPI3 526 aa5.91□□□□□ -1.46
SHKBP1-220ENST00000599716 TRGV1A0A0A0MS02 117 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 PLP1P60201 277 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 UBE2MP61081 183 aaKnown RBP5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 ID3Q02535 119 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 OPCMLQ14982 345 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 PYDC2Q56P42 97 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 CCDC28AQ8IWP9 274 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 TOMM5Q8N4H5 51 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 ZNF431Q8TF32 576 aaPredicted RBP5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 TMEM37Q8WXS4 190 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 KLF12Q9Y4X4 402 aa5.9□□□□□ -1.46
SHKBP1-220ENST00000599716 TRGV2A0A075B6R0 118 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 A0A1W2PPQ1 181 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 M0R3E3 92 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 SIVA1O15304 175 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 NXPH4O95158 308 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 CD300CQ08708 224 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 BTN1A1Q13410 526 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 LCN15Q6UWW0 184 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 TMEM14EPQ6UXP3 125 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 FRZBQ92765 325 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 MGST2Q99735 147 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 MRPS26Q9BYN8 205 aaKnown RBP5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 MRPL16Q9NX20 251 aaKnown RBP5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 TP53TG3Q9ULZ0 132 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 V9GYH0 126 aa5.89□□□□□ -1.47
SHKBP1-220ENST00000599716 C9orf170A2RU37 121 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 H3BMQ9 156 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 GOSR2O14653 212 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 AGPAT2O15120 278 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 COX7A2P2O60397 106 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 FAUP35544 74 aaKnown RBP5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 SELENOTP62341 195 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 PRR9Q5T870 116 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 MIC13Q5XKP0 118 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 TEPPQ6URK8 271 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 LINC00528Q8N1L1 170 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 C11orf72Q8NBR9 251 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 SAT2Q96F10 170 aaPredicted RBP5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 NPVFQ9HCQ7 196 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 FUT9Q9Y231 359 aa5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 RCL1Q9Y2P8 373 aaKnown RBP5.88□□□□□ -1.47
SHKBP1-220ENST00000599716 A0A087WTM6 91 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 NPIPB6E9PJ23 425 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 CCSO14618 274 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 PAX4O43316 350 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 IGLC2P0DOY2 106 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 S100A7P31151 101 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 LEPP41159 167 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 ERVFC1-1P60608 527 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 DAZ2Q13117 558 aaKnown RBP5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 C10orf113Q5VZT2 155 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 BPIFA4PQ86YQ2 179 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 OR10P1Q8NGE3 313 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 RAB2BQ8WUD1 216 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 SMIM8Q96KF7 97 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 C8orf49Q96NF6 230 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 C20orf144Q9BQM9 153 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 SLC50A1Q9BRV3 221 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 GSKIPQ9P0R6 139 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 MGAT4CQ9UBM8 478 aa5.87□□□□□ -1.47
SHKBP1-220ENST00000599716 IGKV2-40A0A087WW87 121 aaPredicted RBP5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 C7orf71A4D174 169 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 E5RGE8 158 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 H3BNG1 76 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 K7EPK0 472 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 PRAF2O60831 178 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 IGKV2D-40P01614 121 aaPredicted RBP5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 CXCL2P19875 107 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 RNASE4P34096 147 aaKnown RBP5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 IAH1Q2TAA2 248 aaPredicted RBP5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 LYPD5Q6UWN5 251 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 ZNF546Q86UE3 836 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 WFDC10BQ8IUB3 73 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 SLC25A21Q9BQT8 299 aaPredicted RBP5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 PYGO2Q9BRQ0 406 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 PGPEP1Q9NXJ5 209 aa5.86□□□□□ -1.47
SHKBP1-220ENST00000599716 RABL2AQ9UBK7 228 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 149 ms