RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 IGLV1-40P01703 118 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 PF4V1P10720 104 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 TMEM183AQ8IXX5 376 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 AAMDCQ9H7C9 122 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 YAE1D1Q9NRH1 226 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 ZNF785A8K8V0 405 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 IGHV3-11P01762 117 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 ARL3P36405 182 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 PDZD11Q5EBL8 140 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 TMEM75Q8N9X5 138 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 GRAMD2BQ96HH9 432 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 TRBV6-1A0A0K0K1D8 114 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 C19orf71A6NCJ1 209 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 IGHG4P01861 327 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 HLA-DMBP28068 263 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 PSG9Q00887 426 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 PSG3Q16557 428 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 C9orf139Q6ZV77 190 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 HIST3H2BBQ8N257 126 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 TMEM190Q8WZ59 177 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 GPR61Q9BZJ8 451 aa13.11□□□□□ -0.31
SHKBP1-216ENST00000598201 MXRA5Q9NR99 2828 aa13.1□□□□□ -0.31
SHKBP1-216ENST00000598201 USMG5Q96IX5 58 aa13.1□□□□□ -0.31
SHKBP1-216ENST00000598201 NEU1Q99519 415 aa13.1□□□□□ -0.31
SHKBP1-216ENST00000598201 PRSS22Q9GZN4 317 aa13.1□□□□□ -0.31
SHKBP1-216ENST00000598201 PSG8Q9UQ74 426 aa13.1□□□□□ -0.31
SHKBP1-216ENST00000598201 XKRY2A2RUG3 117 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 S100A7P31151 101 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 DNLZQ5SXM8 178 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 Q6YL49 198 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 C14orf144Q96I85 54 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 METTL26Q96S19 204 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 ZNF492Q9P255 531 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 U3KQE9 123 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 MRPL54Q6P161 138 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 UNQ9165/PRO28630Q6UXU0 137 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 REC114Q7Z4M0 266 aa13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 ZNF331Q9NQX6 463 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-216ENST00000598201 IGKV2-40A0A087WW87 121 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 IZUMO1RA6ND01 250 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 K7EQM0 130 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 IGKV2D-40P01614 121 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 RAB9AP51151 201 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 NUP35Q8NFH5 326 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 OR5R1Q8NH85 324 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 TSKUQ8WUA8 353 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 ZC2HC1AQ96GY0 325 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 MRPL18Q9H0U6 180 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 RPP21Q9H633 154 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 VPREB3Q9UKI3 123 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 A0A087X0K7 114 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 SNURFLB1AK76 121 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 ZNF253O75346 499 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 C10orf99Q6UWK7 81 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 OR4X2Q8NGF9 303 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 C2orf88Q9BSF0 95 aa13.08□□□□□ -0.32
SHKBP1-216ENST00000598201 ZNF705FA8MVS1 300 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 P01737 135 aa13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 CSN1S1P47710 185 aa13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 COA6Q5JTJ3 125 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 GNB1LQ9BYB4 327 aa13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 ZNF580Q9UK33 172 aa13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 ZFP30Q9Y2G7 519 aa13.07□□□□□ -0.32
SHKBP1-216ENST00000598201 CHEK1O14757 476 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 C1orf194Q5T5A4 169 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 TMEM136Q6ZRR5 245 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 HIGD1CA8MV81 97 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 HOXA3O43365 443 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 RAB4AP20338 218 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 TCF24Q7RTU0 167 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 GBGT1Q8N5D6 347 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 C8orf49Q96NF6 230 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 NAT8BQ9UHF3 227 aa13.06□□□□□ -0.32
SHKBP1-216ENST00000598201 HIVEP2P31629 2446 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 A0A1B0GUS0 222 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 NPIPB6E9PJ23 425 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 NDUFA4O00483 81 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 CRIP1P50238 77 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 RNF182Q8N6D2 247 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 GTSF1Q8WW33 167 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 DAZAP1Q96EP5 407 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 TMEM160Q9NX00 188 aa13.05□□□□□ -0.32
SHKBP1-216ENST00000598201 PSMB8P28062 276 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 LCN12Q6JVE5 192 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 VGLL1Q99990 258 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 SONP18583 2426 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 A0A0G2JLM5 398 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 SERTM2A0A1B0GWG4 89 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 CT83Q5H943 113 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 C16orf54Q6UWD8 224 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 IL17RELQ6ZVW7 336 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 PRDM13Q9H4Q3 707 aa13.04□□□□□ -0.32
SHKBP1-216ENST00000598201 GRIFINA4D1Z8 144 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 PRAC2D3DTV9 90 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 FABP4P15090 132 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 GDF5OSQ5U4N7 250 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 HIST1H2BLQ99880 126 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 TRAV8-2A0A0B4J237 113 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms