RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 GLMPQ8WWB7 406 aa4.74□□□□□ -1.65
LIG3-206ENST00000586058 ZNF331Q9NQX6 463 aaPredicted RBP4.74□□□□□ -1.65
LIG3-206ENST00000586058 ASH1LQ9NR48 2969 aaKnown RBP4.74□□□□□ -1.65
LIG3-206ENST00000586058 SMPXQ9UHP9 88 aa4.74□□□□□ -1.65
LIG3-206ENST00000586058 FASNP49327 2511 aaKnown RBP4.74□□□□□ -1.65
LIG3-206ENST00000586058 HIVEP2P31629 2446 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 IGKV3-7A0A075B6H7 116 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 C7orf77A4D0Y5 90 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 RBAKDNA6NC62 111 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 CXorf65A6NEN9 183 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 DIRC3C9JPN6 131 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 CCL24O00175 119 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 SLC17A3O00476 420 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 OVOL1O14753 267 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 CHEK1O14757 476 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 MRPS12O15235 138 aaKnown RBP4.73□□□□□ -1.65
LIG3-206ENST00000586058 CD28P10747 220 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 SLURP1P55000 103 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 ERVFC1-1P60608 527 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 RPL23P62829 140 aaKnown RBP4.73□□□□□ -1.65
LIG3-206ENST00000586058 BTN1A1Q13410 526 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 ODF1Q14990 250 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 PSG3Q16557 428 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 SAPCD1Q5SSQ6 148 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 IBA57Q5T440 356 aaKnown RBP4.73□□□□□ -1.65
LIG3-206ENST00000586058 PRR27Q6MZM9 219 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 PRNTQ86SH4 94 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 LINC01551Q86U37 167 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 BAGE2Q86Y30 109 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 NDUFA11Q86Y39 141 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 GBGT1Q8N5D6 347 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 LINC00469Q8N7U9 141 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 C11orf44Q8N8P7 122 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 C2CD4CQ8TF44 421 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 SFRP2Q96HF1 295 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 DERL1Q9BUN8 251 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 PPP1R14DQ9NXH3 145 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 ZFP30Q9Y2G7 519 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 U3KQE9 123 aa4.73□□□□□ -1.65
LIG3-206ENST00000586058 CCDC168Q8NDH2 2452 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 TEX15Q9BXT5 2789 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 VPS13CQ709C8 3753 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 MYO9AB2RTY4 2548 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 NBPF19A0A087WUL8 3843 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 TMEM213A2RRL7 107 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 XKRY2A2RUG3 117 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 OR4C46A6NHA9 309 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 C2orf70A6NJV1 201 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 FOLR2P14207 255 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 CBLN1P23435 193 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 MYCNOSP40205 109 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 PROK1P58294 105 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 NSUN5P1Q3KNT7 163 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 RNF212Q495C1 297 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 TCTEX1D4Q5JR98 221 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 EBLN2Q6P2I7 272 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 OR10G8Q8NGN5 311 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 ISOC2Q96AB3 205 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 BORCS7Q96B45 105 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 CITED2Q99967 270 aaPredicted RBP4.72□□□□□ -1.65
LIG3-206ENST00000586058 KRTAP4-12Q9BQ66 201 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 TMEM242Q9NWH2 141 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 MLXQ9UH92 298 aa4.72□□□□□ -1.65
LIG3-206ENST00000586058 TRAV2A0A0B4J234 112 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 TRBV6-1A0A0K0K1D8 114 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 ZNF705GA8MUZ8 300 aaPredicted RBP4.71□□□□□ -1.66
LIG3-206ENST00000586058 GATCO43716 136 aaKnown RBP4.71□□□□□ -1.66
LIG3-206ENST00000586058 SAP30O75446 220 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 SCO1O75880 301 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 LTAP01374 205 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 P01737 135 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 APOHP02749 345 aaPredicted RBP4.71□□□□□ -1.66
LIG3-206ENST00000586058 KLF5Q13887 457 aaPredicted RBP4.71□□□□□ -1.66
LIG3-206ENST00000586058 LCN12Q6JVE5 192 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 TMEM88Q6PEY1 159 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 WFDC3Q8IUB2 231 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 CBLN2Q8IUK8 224 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 TMEM183AQ8IXX5 376 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 OR4B1Q8NGF8 309 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 IGF2BP2-AS1Q96M15 143 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 C17orf77Q96MU5 243 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 TUBA4BQ9H853 241 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 PSG8Q9UQ74 426 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 HECTD1Q9ULT8 2610 aa4.71□□□□□ -1.66
LIG3-206ENST00000586058 TRAV9-1A0A075B6T8 112 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 IGKV2-40A0A087WW87 121 aaPredicted RBP4.7□□□□□ -1.66
LIG3-206ENST00000586058 TRAV34A0A0B4J273 112 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 TRAV25A0A0B4J276 109 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 PGPEP1LA6NFU8 196 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 M0R3E3 92 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 DUSP14O95147 198 aaKnown RBP4.7□□□□□ -1.66
LIG3-206ENST00000586058 GCGP01275 180 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 IGKV2D-40P01614 121 aaPredicted RBP4.7□□□□□ -1.66
LIG3-206ENST00000586058 TFPI2P48307 235 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 CMC4P56277 68 aaPredicted RBP4.7□□□□□ -1.66
LIG3-206ENST00000586058 HIST1H1AQ02539 215 aaPredicted RBP4.7□□□□□ -1.66
LIG3-206ENST00000586058 FHL3Q13643 280 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 SMUG1Q53HV7 270 aa4.7□□□□□ -1.66
LIG3-206ENST00000586058 SHISA2Q6UWI4 295 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms