RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 ICAM4Q14773 271 aa12.34□□□□□ -0.43
COMMD4-224ENST00000568877 TRPT1Q86TN4 253 aaKnown RBP12.34□□□□□ -0.43
COMMD4-224ENST00000568877 IQCF2Q8IXL9 164 aa12.34□□□□□ -0.43
COMMD4-224ENST00000568877 MBD3L1Q8WWY6 194 aa12.34□□□□□ -0.43
COMMD4-224ENST00000568877 MRPL53Q96EL3 112 aaKnown RBP12.34□□□□□ -0.43
COMMD4-224ENST00000568877 Q9H3A6 140 aa12.34□□□□□ -0.43
COMMD4-224ENST00000568877 PRELID1Q9Y255 219 aa12.34□□□□□ -0.43
COMMD4-224ENST00000568877 HLA-DRB4X5D2U9 266 aa12.34□□□□□ -0.43
COMMD4-224ENST00000568877 M0R3E3 92 aa12.33□□□□□ -0.44
COMMD4-224ENST00000568877 SBSPONQ8IVN8 264 aa12.33□□□□□ -0.44
COMMD4-224ENST00000568877 SFT2D1Q8WV19 159 aa12.33□□□□□ -0.44
COMMD4-224ENST00000568877 PRKDCP78527 4128 aaKnown RBP12.32□□□□□ -0.44
COMMD4-224ENST00000568877 KIR2DL5BA0A0G2JN68 375 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 KIR2DL5BA0A0G2JPC4 375 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 PRAC2D3DTV9 90 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 H2AFB1P0C5Y9 115 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 APOC4P55056 127 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 HAGHQ16775 308 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 FAM74A1Q5RGS3 127 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 ALKAL2Q6UX46 152 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 KIR2DL5AQ8N109 375 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 OR8A1Q8NGG7 326 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 KIR2DL5BQ8NHK3 375 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 ASCL2Q99929 193 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 TMPRSS5Q9H3S3 457 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 OTORQ9NRC9 128 aa12.32□□□□□ -0.44
COMMD4-224ENST00000568877 PGPA6NDG6 321 aa12.31□□□□□ -0.44
COMMD4-224ENST00000568877 DUSP14O95147 198 aaKnown RBP12.31□□□□□ -0.44
COMMD4-224ENST00000568877 ZNF705DP0CH99 300 aaPredicted RBP12.31□□□□□ -0.44
COMMD4-224ENST00000568877 ZNF705BP0CI00 300 aaPredicted RBP12.31□□□□□ -0.44
COMMD4-224ENST00000568877 PRB4P10163 310 aaPredicted RBP12.31□□□□□ -0.44
COMMD4-224ENST00000568877 OR4B1Q8NGF8 309 aa12.31□□□□□ -0.44
COMMD4-224ENST00000568877 CLUHP3Q96NS8 147 aa12.31□□□□□ -0.44
COMMD4-224ENST00000568877 CSTL1Q9H114 145 aa12.31□□□□□ -0.44
COMMD4-224ENST00000568877 DNAH9Q9NYC9 4486 aa12.31□□□□□ -0.44
COMMD4-224ENST00000568877 IGKV3-20P01619 116 aa12.3□□□□□ -0.44
COMMD4-224ENST00000568877 CNN1P51911 297 aaKnown RBP12.3□□□□□ -0.44
COMMD4-224ENST00000568877 HIST1H1AQ02539 215 aaPredicted RBP12.3□□□□□ -0.44
COMMD4-224ENST00000568877 MORN3Q6PF18 240 aaPredicted RBP12.3□□□□□ -0.44
COMMD4-224ENST00000568877 OR10J6PQ8NGY7 276 aa12.3□□□□□ -0.44
COMMD4-224ENST00000568877 A0A1W2PRE2 83 aa12.29□□□□□ -0.44
COMMD4-224ENST00000568877 A8MTW9 85 aa12.29□□□□□ -0.44
COMMD4-224ENST00000568877 UBE2CO00762 179 aa12.29□□□□□ -0.44
COMMD4-224ENST00000568877 CSN1S1P47710 185 aa12.29□□□□□ -0.44
COMMD4-224ENST00000568877 RXFP4Q8TDU9 374 aa12.29□□□□□ -0.44
COMMD4-224ENST00000568877 A0A1B0GV50 99 aa12.28□□□□□ -0.44
COMMD4-224ENST00000568877 ZNF705EA8MWA4 302 aaPredicted RBP12.28□□□□□ -0.44
COMMD4-224ENST00000568877 NUTF2P61970 127 aaKnown RBP12.28□□□□□ -0.44
COMMD4-224ENST00000568877 CMTM2Q8TAZ6 248 aa12.28□□□□□ -0.44
COMMD4-224ENST00000568877 TRAV1-1A0A0B4J248 108 aa12.27□□□□□ -0.45
COMMD4-224ENST00000568877 TEX46H3BTG2 121 aa12.27□□□□□ -0.45
COMMD4-224ENST00000568877 CA1P00915 261 aaPredicted RBP12.27□□□□□ -0.45
COMMD4-224ENST00000568877 UBE2G2P60604 165 aa12.27□□□□□ -0.45
COMMD4-224ENST00000568877 ARL6IP6Q8N6S5 226 aa12.27□□□□□ -0.45
COMMD4-224ENST00000568877 TM2D3Q9BRN9 247 aa12.27□□□□□ -0.45
COMMD4-224ENST00000568877 YTHDF2Q9Y5A9 579 aaKnown RBP12.27□□□□□ -0.45
COMMD4-224ENST00000568877 IGKV2-40A0A087WW87 121 aaPredicted RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 FAM74A7A6NL05 159 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 GGTLC3B5MD39 225 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 NPIPB6E9PJ23 425 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 IGKV2D-40P01614 121 aaPredicted RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 HBE1P02100 147 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 SLC25A5P05141 298 aaKnown RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 GIG44P09565 113 aaPredicted RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 NHLRC4P0CG21 123 aaPredicted RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 SUMO1P63165 101 aaKnown RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 CCL20P78556 96 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 AMTNQ6UX39 209 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 Q6ZWC4 215 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 NKX6-2Q9C056 277 aaPredicted RBP12.26□□□□□ -0.45
COMMD4-224ENST00000568877 SLC35B3Q9H1N7 401 aa12.26□□□□□ -0.45
COMMD4-224ENST00000568877 DIRC3C9JPN6 131 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 PPT1P50897 306 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 FXYD7P58549 80 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 BLOC1S1P78537 153 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 ERCC8Q13216 396 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 TEX261Q6UWH6 196 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 C5orf17Q8NAS9 161 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 SPATA25Q9BR10 227 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 PPP1R14DQ9NXH3 145 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 RPH3ALQ9UNE2 315 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 ARL2-SNX15V9GYD0 113 aa12.25□□□□□ -0.45
COMMD4-224ENST00000568877 RBAKDNA6NC62 111 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 AGRNO00468 2067 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 PAGE4O60829 102 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 CT45A10P0DMU9 189 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 GNG5P63218 68 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 DEFB135Q30KP9 77 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 C9orf47Q6ZRZ4 202 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 LINC00477Q96M19 166 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 VGLL1Q99990 258 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 C1QTNF4Q9BXJ3 329 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 AGPAT4-IT1Q9H0P7 198 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 ZMAT4Q9H898 229 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 XCL2Q9UBD3 114 aa12.24□□□□□ -0.45
COMMD4-224ENST00000568877 HUWE1Q7Z6Z7 4374 aaKnown RBP12.23□□□□□ -0.45
COMMD4-224ENST00000568877 SPINK13Q1W4C9 94 aa12.23□□□□□ -0.45
COMMD4-224ENST00000568877 TMEM78Q5T7P6 136 aa12.23□□□□□ -0.45
COMMD4-224ENST00000568877 CST9LP1Q5W188 147 aa12.23□□□□□ -0.45
COMMD4-224ENST00000568877 ZNF680Q8NEM1 530 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms