RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 TUBA4BQ9H853 241 aa10.16□□□□□ -0.78
CD44-224ENST00000526669 YTHDF2Q9Y5A9 579 aaKnown RBP10.16□□□□□ -0.78
CD44-224ENST00000526669 PRKDCP78527 4128 aaKnown RBP10.16□□□□□ -0.78
CD44-224ENST00000526669 IGKV3-20P01619 116 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 HBE1P02100 147 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 IGHV4-30-4P0DP06 118 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 BLOC1S1P78537 153 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 IFITM2Q01629 132 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 DEFB121Q5J5C9 76 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 MRAPQ8TCY5 172 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 OTORQ9NRC9 128 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 DNAH9Q9NYC9 4486 aa10.15□□□□□ -0.78
CD44-224ENST00000526669 TEX46H3BTG2 121 aa10.14□□□□□ -0.79
CD44-224ENST00000526669 PAGE4O60829 102 aa10.14□□□□□ -0.79
CD44-224ENST00000526669 SLC25A5P05141 298 aaKnown RBP10.14□□□□□ -0.79
CD44-224ENST00000526669 GNG5P63218 68 aa10.14□□□□□ -0.79
CD44-224ENST00000526669 HIST1H1AQ02539 215 aaPredicted RBP10.14□□□□□ -0.79
CD44-224ENST00000526669 STHQ8IWL8 128 aa10.14□□□□□ -0.79
CD44-224ENST00000526669 FAM110AQ9BQ89 295 aa10.14□□□□□ -0.79
CD44-224ENST00000526669 SAV1Q9H4B6 383 aaPredicted RBP10.14□□□□□ -0.79
CD44-224ENST00000526669 GNG13Q9P2W3 67 aa10.14□□□□□ -0.79
CD44-224ENST00000526669 IGKV2-40A0A087WW87 121 aaPredicted RBP10.13□□□□□ -0.79
CD44-224ENST00000526669 A0A0J9YX75 114 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 RBMY1BA6NDE4 496 aaKnown RBP10.13□□□□□ -0.79
CD44-224ENST00000526669 RBMY1EA6NEQ0 496 aaKnown RBP10.13□□□□□ -0.79
CD44-224ENST00000526669 FAM74A7A6NL05 159 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 GGTLC3B5MD39 225 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 IGKV2D-40P01614 121 aaPredicted RBP10.13□□□□□ -0.79
CD44-224ENST00000526669 RBMY1DP0C7P1 496 aaKnown RBP10.13□□□□□ -0.79
CD44-224ENST00000526669 ATP5G3P48201 142 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 SUMO1P63165 101 aaKnown RBP10.13□□□□□ -0.79
CD44-224ENST00000526669 CST9LP1Q5W188 147 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 EBLN2Q6P2I7 272 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 FOXI2Q6ZQN5 318 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 LYPD1Q8N2G4 141 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 OR4B1Q8NGF8 309 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 PRELID1Q9Y255 219 aa10.13□□□□□ -0.79
CD44-224ENST00000526669 TRAV1-1A0A0B4J248 108 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 A0A1W2PRE2 83 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 HLA-DRB4P13762 266 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 FXYD7P58549 80 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 ERCC8Q13216 396 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 OR8A1Q8NGG7 326 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 CMTM2Q8TAZ6 248 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 MRPL53Q96EL3 112 aaKnown RBP10.12□□□□□ -0.79
CD44-224ENST00000526669 CLEC5AQ9NY25 188 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 HLA-DRB4X5D2U9 266 aa10.12□□□□□ -0.79
CD44-224ENST00000526669 H3BMM0 161 aa10.11□□□□□ -0.79
CD44-224ENST00000526669 FRMD6-AS1P0C7T7 363 aa10.11□□□□□ -0.79
CD44-224ENST00000526669 CSN1S1P47710 185 aa10.11□□□□□ -0.79
CD44-224ENST00000526669 CNN1P51911 297 aaKnown RBP10.11□□□□□ -0.79
CD44-224ENST00000526669 HAGHQ16775 308 aa10.11□□□□□ -0.79
CD44-224ENST00000526669 ASCL2Q99929 193 aa10.11□□□□□ -0.79
CD44-224ENST00000526669 MEGF8Q7Z7M0 2845 aa10.11□□□□□ -0.79
CD44-224ENST00000526669 HUWE1Q7Z6Z7 4374 aaKnown RBP10.1□□□□□ -0.79
CD44-224ENST00000526669 LOC102724200A0A096LPH7 203 aaPredicted RBP10.1□□□□□ -0.79
CD44-224ENST00000526669 DIRC3C9JPN6 131 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 NMBP08949 121 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 PPT1P50897 306 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 GOLT1AQ6ZVE7 132 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 TRPT1Q86TN4 253 aaKnown RBP10.1□□□□□ -0.79
CD44-224ENST00000526669 C5orf17Q8NAS9 161 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 OR10J6PQ8NGY7 276 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 VGLL1Q99990 258 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 MANBALQ9NQG1 85 aa10.1□□□□□ -0.79
CD44-224ENST00000526669 DUSP14O95147 198 aaKnown RBP10.09□□□□□ -0.79
CD44-224ENST00000526669 IFNA1P01562 189 aa10.09□□□□□ -0.79
CD44-224ENST00000526669 ZNF767PQ75MW2 155 aa10.09□□□□□ -0.79
CD44-224ENST00000526669 LYPD6BQ8NI32 183 aa10.09□□□□□ -0.79
CD44-224ENST00000526669 RXFP4Q8TDU9 374 aa10.09□□□□□ -0.79
CD44-224ENST00000526669 SGK494Q96LW2 274 aa10.09□□□□□ -0.79
CD44-224ENST00000526669 SLC35B3Q9H1N7 401 aa10.09□□□□□ -0.79
CD44-224ENST00000526669 C11orf94C9JXX5 98 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 J3KRW8 73 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 PEX7O00628 323 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 Q8TAT8 98 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 RARRES2Q99969 163 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 AGPAT4-IT1Q9H0P7 198 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 PPP1R14DQ9NXH3 145 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 EPDR1Q9UM22 224 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 ARL2-SNX15V9GYD0 113 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 NBEAL2Q6ZNJ1 2754 aa10.08□□□□□ -0.8
CD44-224ENST00000526669 TRAV8-1A0A0A6YYK1 113 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 TRAV34A0A0B4J273 112 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 LOC102723971A0A1B0GUV8 181 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 SCO2A0A1W2PP80 73 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 A8MZ25 164 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 NPIPB6E9PJ23 425 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 M0R2Z0 102 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 TCRAP04437 139 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 CT45A10P0DMU9 189 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 BCL2P10415 239 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 TOR2AQ5JU69 321 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 CCDC28AQ8IWP9 274 aa10.07□□□□□ -0.8
CD44-224ENST00000526669 NKX6-2Q9C056 277 aaPredicted RBP10.07□□□□□ -0.8
CD44-224ENST00000526669 A8MTW9 85 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 CA1P00915 261 aaPredicted RBP10.06□□□□□ -0.8
CD44-224ENST00000526669 RAB14P61106 215 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 SPINK13Q1W4C9 94 aa10.06□□□□□ -0.8
CD44-224ENST00000526669 TMEM78Q5T7P6 136 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms