RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 C8orf49Q96NF6 230 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 NBASA2RRP1 2371 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 HRNRQ86YZ3 2850 aaPredicted RBP11.52□□□□□ -0.57
NUP54-217ENST00000514987 IGKV2-40A0A087WW87 121 aaPredicted RBP11.52□□□□□ -0.57
NUP54-217ENST00000514987 A0A1B0GV90 55 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 IGKV2D-40P01614 121 aaPredicted RBP11.52□□□□□ -0.57
NUP54-217ENST00000514987 SPATA45Q537H7 98 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 LCN12Q6JVE5 192 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 CLEC2AQ6UVW9 174 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 C10orf105Q8TEF2 133 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 MRPL53Q96EL3 112 aaKnown RBP11.52□□□□□ -0.57
NUP54-217ENST00000514987 URB1-AS1Q96HZ7 61 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 METTL26Q96S19 204 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 TMEM70Q9BUB7 260 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 SNHG12Q9BXW3 62 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 CLEC5AQ9NY25 188 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 UQCR10Q9UDW1 63 aa11.52□□□□□ -0.57
NUP54-217ENST00000514987 TRAV41A0A0B4J266 112 aa11.51□□□□□ -0.57
NUP54-217ENST00000514987 C2orf70A6NJV1 201 aa11.51□□□□□ -0.57
NUP54-217ENST00000514987 BRI3O95415 125 aa11.51□□□□□ -0.57
NUP54-217ENST00000514987 CLEC19AQ6UXS0 136 aa11.51□□□□□ -0.57
NUP54-217ENST00000514987 CCDC140Q96MF4 163 aa11.51□□□□□ -0.57
NUP54-217ENST00000514987 G3V318 75 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 EREGO14944 169 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 C19orf54Q5BKX5 351 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 EBLN2Q6P2I7 272 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 HIF1ANQ9NWT6 349 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 TRAV9-2A0A087WT02 112 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 IGHV1-24A0A0C4DH33 117 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 CRXO43186 299 aaPredicted RBP11.5□□□□□ -0.57
NUP54-217ENST00000514987 LEPROTL1O95214 131 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 IGHG4P01861 327 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 Q71RC1 249 aaPredicted RBP11.5□□□□□ -0.57
NUP54-217ENST00000514987 HSPB8Q9UJY1 196 aa11.5□□□□□ -0.57
NUP54-217ENST00000514987 SPTBN1Q01082 2364 aaKnown RBP11.49□□□□□ -0.57
NUP54-217ENST00000514987 LRBAP50851 2863 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 FABP5P3A8MUU1 101 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 H3BUA1 57 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 ZZEF1O43149 2961 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 NUTF2P61970 127 aaKnown RBP11.49□□□□□ -0.57
NUP54-217ENST00000514987 LYZL1Q6UWQ5 148 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 U3KQE9 123 aa11.49□□□□□ -0.57
NUP54-217ENST00000514987 IGHV4-61A0A0C4DH41 118 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 CLPSL1A2RUU4 121 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 LINC01548A6NM66 108 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 IGF1P05019 195 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 ASCL2Q99929 193 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 VGLL1Q99990 258 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 TPPP3Q9BW30 176 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 U3KQK5 164 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 WNK2Q9Y3S1 2297 aa11.48□□□□□ -0.57
NUP54-217ENST00000514987 SPTBN4Q9H254 2564 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 IGHV3-35A0A0C4DH35 117 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 IGLC3P0DOY3 106 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 DSCR9P59020 149 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 FER1L6-AS1Q8NA97 138 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 PIFOQ8TCI5 191 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 SPOCK3Q9BQ16 436 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 MAP1LC3CQ9BXW4 147 aa11.47□□□□□ -0.57
NUP54-217ENST00000514987 TRAV40A0A0B4J280 105 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 SYS1-DBNDD2H3BUS1 97 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 IGLC6P0CF74 106 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 ATP5J2P56134 94 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 FAM104BQ5XKR9 115 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 PET117Q6UWS5 81 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 FA2HQ7L5A8 372 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 TMEM219Q86XT9 240 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 USMG5Q96IX5 58 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 AP5S1Q9NUS5 200 aa11.46□□□□□ -0.57
NUP54-217ENST00000514987 TRGV3P03979 118 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 HIST1H1AQ02539 215 aaPredicted RBP11.45□□□□□ -0.58
NUP54-217ENST00000514987 ORMDL3Q8N138 153 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 PRSS3P2Q8NHM4 247 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 TMEM191AQ9H0A3 160 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 PPP1R14DQ9NXH3 145 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 DCHS2Q6V1P9 2916 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 IGHV3OR16-8A0A075B7F1 116 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 TMSB15BA0A087X1C1 80 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 M0QZ24 198 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 MSMBP08118 114 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 GATA3P23771 443 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 HLA-DMBP28068 263 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 LINC01559Q495D7 138 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 Q8TAT8 98 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 CNFNQ9BYD5 112 aa11.45□□□□□ -0.58
NUP54-217ENST00000514987 A6NDX4 124 aa11.44□□□□□ -0.58
NUP54-217ENST00000514987 IGHG2P01859 326 aa11.44□□□□□ -0.58
NUP54-217ENST00000514987 ORM1P02763 201 aa11.44□□□□□ -0.58
NUP54-217ENST00000514987 RPLP1P05386 114 aaKnown RBP11.44□□□□□ -0.58
NUP54-217ENST00000514987 ZNF80P51504 273 aaPredicted RBP11.44□□□□□ -0.58
NUP54-217ENST00000514987 TMEM78Q5T7P6 136 aa11.44□□□□□ -0.58
NUP54-217ENST00000514987 OR10AG1Q8NH19 301 aa11.44□□□□□ -0.58
NUP54-217ENST00000514987 IGHV3OR16-10A0A075B7F0 116 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 NDUFA4O00483 81 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 ARL3P36405 182 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 HNRNPA3P51991 378 aaKnown RBP11.43□□□□□ -0.58
NUP54-217ENST00000514987 ZNF138P52744 262 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 TWIST1Q15672 202 aa11.43□□□□□ -0.58
NUP54-217ENST00000514987 IGFL4Q6B9Z1 124 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms