RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ICAM4Q14773 271 aa21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 SUN5Q8TC36 379 aa21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 TMPRSS5Q9H3S3 457 aa21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 HLA-DRB4X5D2U9 266 aa21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 A0A1B0GV50 99 aa21.85■■□□□ 1.09
LIMCH1-211ENST00000509638 H2AFB1P0C5Y9 115 aa21.85■■□□□ 1.09
LIMCH1-211ENST00000509638 MBD3L1Q8WWY6 194 aa21.85■■□□□ 1.09
LIMCH1-211ENST00000509638 LOC102724200A0A096LPH7 203 aaPredicted RBP21.84■■□□□ 1.09
LIMCH1-211ENST00000509638 A0A0J9YX75 114 aa21.84■■□□□ 1.09
LIMCH1-211ENST00000509638 EBLN2Q6P2I7 272 aa21.84■■□□□ 1.09
LIMCH1-211ENST00000509638 LYPD1Q8N2G4 141 aa21.84■■□□□ 1.09
LIMCH1-211ENST00000509638 LINC00322Q6ZN03 302 aaPredicted RBP21.83■■□□□ 1.09
LIMCH1-211ENST00000509638 TRPT1Q86TN4 253 aaKnown RBP21.83■■□□□ 1.09
LIMCH1-211ENST00000509638 MRPL53Q96EL3 112 aaKnown RBP21.83■■□□□ 1.09
LIMCH1-211ENST00000509638 PRELID1Q9Y255 219 aa21.83■■□□□ 1.09
LIMCH1-211ENST00000509638 H3BMM0 161 aa21.82■■□□□ 1.08
LIMCH1-211ENST00000509638 ZNF705DP0CH99 300 aaPredicted RBP21.82■■□□□ 1.08
LIMCH1-211ENST00000509638 ZNF705BP0CI00 300 aaPredicted RBP21.82■■□□□ 1.08
LIMCH1-211ENST00000509638 ZNF705EA8MWA4 302 aaPredicted RBP21.81■■□□□ 1.08
LIMCH1-211ENST00000509638 PRAC2D3DTV9 90 aa21.81■■□□□ 1.08
LIMCH1-211ENST00000509638 OR8A1Q8NGG7 326 aa21.81■■□□□ 1.08
LIMCH1-211ENST00000509638 OTORQ9NRC9 128 aa21.81■■□□□ 1.08
LIMCH1-211ENST00000509638 IGKV3-20P01619 116 aa21.8■■□□□ 1.08
LIMCH1-211ENST00000509638 HIST1H1AQ02539 215 aaPredicted RBP21.8■■□□□ 1.08
LIMCH1-211ENST00000509638 NBEAL2Q6ZNJ1 2754 aa21.8■■□□□ 1.08
LIMCH1-211ENST00000509638 OR4B1Q8NGF8 309 aa21.79■■□□□ 1.08
LIMCH1-211ENST00000509638 CNN1P51911 297 aaKnown RBP21.78■■□□□ 1.08
LIMCH1-211ENST00000509638 UBE2G2P60604 165 aa21.78■■□□□ 1.08
LIMCH1-211ENST00000509638 COL7A1Q02388 2944 aa21.78■■□□□ 1.08
LIMCH1-211ENST00000509638 APOC4P55056 127 aa21.78■■□□□ 1.08
LIMCH1-211ENST00000509638 B9D2Q9BPU9 175 aa21.78■■□□□ 1.08
LIMCH1-211ENST00000509638 YTHDF2Q9Y5A9 579 aaKnown RBP21.78■■□□□ 1.08
LIMCH1-211ENST00000509638 PGPA6NDG6 321 aa21.77■■□□□ 1.08
LIMCH1-211ENST00000509638 GGTLC3B5MD39 225 aa21.77■■□□□ 1.08
LIMCH1-211ENST00000509638 HAGHQ16775 308 aa21.77■■□□□ 1.08
LIMCH1-211ENST00000509638 TRAV1-1A0A0B4J248 108 aa21.76■■□□□ 1.07
LIMCH1-211ENST00000509638 DUSP14O95147 198 aaKnown RBP21.76■■□□□ 1.07
LIMCH1-211ENST00000509638 TEX261Q6UWH6 196 aa21.76■■□□□ 1.07
LIMCH1-211ENST00000509638 SBSPONQ8IVN8 264 aa21.76■■□□□ 1.07
LIMCH1-211ENST00000509638 OR10J6PQ8NGY7 276 aa21.76■■□□□ 1.07
LIMCH1-211ENST00000509638 KIR2DL5BA0A0G2JN68 375 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 KIR2DL5BA0A0G2JPC4 375 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 A0A1W2PRE2 83 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 CSN1S1P47710 185 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 KIR2DL5AQ8N109 375 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 KIR2DL5BQ8NHK3 375 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 CMTM2Q8TAZ6 248 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 ASCL2Q99929 193 aa21.75■■□□□ 1.07
LIMCH1-211ENST00000509638 IGKV2-40A0A087WW87 121 aaPredicted RBP21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 TEX46H3BTG2 121 aa21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 IGKV2D-40P01614 121 aaPredicted RBP21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 HBE1P02100 147 aa21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 RPH3ALQ9UNE2 315 aa21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 FAM74A7A6NL05 159 aa21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 CSTL1Q9H114 145 aa21.74■■□□□ 1.07
LIMCH1-211ENST00000509638 A8MTW9 85 aa21.73■■□□□ 1.07
LIMCH1-211ENST00000509638 CA1P00915 261 aaPredicted RBP21.73■■□□□ 1.07
LIMCH1-211ENST00000509638 SLC25A5P05141 298 aaKnown RBP21.73■■□□□ 1.07
LIMCH1-211ENST00000509638 RXFP4Q8TDU9 374 aa21.73■■□□□ 1.07
LIMCH1-211ENST00000509638 CLUHP3Q96NS8 147 aa21.73■■□□□ 1.07
LIMCH1-211ENST00000509638 SUMO1P63165 101 aaKnown RBP21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 GNG5P63218 68 aa21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 CCL20P78556 96 aa21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 MORN3Q6PF18 240 aaPredicted RBP21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 C5orf17Q8NAS9 161 aa21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 ZNF680Q8NEM1 530 aa21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 ARL2-SNX15V9GYD0 113 aa21.72■■□□□ 1.07
LIMCH1-211ENST00000509638 NPIPB6E9PJ23 425 aa21.71■■□□□ 1.07
LIMCH1-211ENST00000509638 AMTNQ6UX39 209 aa21.71■■□□□ 1.07
LIMCH1-211ENST00000509638 SLC35B3Q9H1N7 401 aa21.71■■□□□ 1.07
LIMCH1-211ENST00000509638 TENM3Q9P273 2699 aa21.71■■□□□ 1.07
LIMCH1-211ENST00000509638 DIRC3C9JPN6 131 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 NUTF2P61970 127 aaKnown RBP21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 BLOC1S1P78537 153 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 DNAH9Q9NYC9 4486 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 PAGE4O60829 102 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 IFNA7P01567 189 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 PPT1P50897 306 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 FXYD7P58549 80 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 ERCC8Q13216 396 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 GNG13Q9P2W3 67 aa21.7■■□□□ 1.06
LIMCH1-211ENST00000509638 GIG44P09565 113 aaPredicted RBP21.69■■□□□ 1.06
LIMCH1-211ENST00000509638 CST9LP1Q5W188 147 aa21.69■■□□□ 1.06
LIMCH1-211ENST00000509638 VGLL1Q99990 258 aa21.69■■□□□ 1.06
LIMCH1-211ENST00000509638 NKX6-2Q9C056 277 aaPredicted RBP21.69■■□□□ 1.06
LIMCH1-211ENST00000509638 TGP01266 2768 aa21.68■■□□□ 1.06
LIMCH1-211ENST00000509638 UBE2CO00762 179 aa21.68■■□□□ 1.06
LIMCH1-211ENST00000509638 GOLT1AQ6ZVE7 132 aa21.68■■□□□ 1.06
LIMCH1-211ENST00000509638 ARL6IP6Q8N6S5 226 aa21.68■■□□□ 1.06
LIMCH1-211ENST00000509638 MANBALQ9NQG1 85 aa21.68■■□□□ 1.06
LIMCH1-211ENST00000509638 PPP1R14DQ9NXH3 145 aa21.68■■□□□ 1.06
LIMCH1-211ENST00000509638 ATP5G3P48201 142 aa21.67■■□□□ 1.06
LIMCH1-211ENST00000509638 DEFB135Q30KP9 77 aa21.67■■□□□ 1.06
LIMCH1-211ENST00000509638 RBAKDNA6NC62 111 aa21.66■■□□□ 1.06
LIMCH1-211ENST00000509638 SPINK13Q1W4C9 94 aa21.66■■□□□ 1.06
LIMCH1-211ENST00000509638 C9orf47Q6ZRZ4 202 aa21.66■■□□□ 1.06
LIMCH1-211ENST00000509638 RETNQ9HD89 108 aa21.66■■□□□ 1.06
LIMCH1-211ENST00000509638 M0R2Z0 102 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 TCRAP04437 139 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 TMEM78Q5T7P6 136 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms