RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SND1-IT1Q9HBX3 110 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 NWD1Q149M9 1564 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 SAMD9Q5K651 1589 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 UBR1Q8IWV7 1749 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 CRYBG1Q9Y4K1 1723 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 PCSK5Q92824 1860 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 DSCAMO60469 2012 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 KIAA2026Q5HYC2 2103 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 MYO9BQ13459 2157 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 NYNRINQ9P2P1 1898 aaKnown RBP3.09□□□□□ -1.91
BRCA1-220ENST00000492859 MEGF6O75095 1541 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 ASXL1Q8IXJ9 1541 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 CRB1P82279 1406 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV1-45A0A0A0MS14 117 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 TMEM272A0A1B0GTI8 110 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 ELK1P19419 428 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 MPV17P39210 176 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 FGF12P61328 243 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 CCL8P80075 99 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 BSPH1Q075Z2 132 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 ZNF678Q5SXM1 525 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 CFAP126Q5VTH2 177 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 SMIM5Q71RC9 77 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 HMGN2P46Q86SG4 172 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 C5orf38Q86SI9 138 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 OR5AS1Q8N127 324 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 Q8N8P6 123 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 TSKUQ8WUA8 353 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 ITLN1Q8WWA0 313 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 ITLN2Q8WWU7 325 aaPredicted RBP3.09□□□□□ -1.91
BRCA1-220ENST00000492859 ODF3Q96PU9 254 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 SLC25A2Q9BXI2 301 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 CYSTM1Q9H1C7 97 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 Q9H3A6 140 aa3.09□□□□□ -1.91
BRCA1-220ENST00000492859 CEP170BQ9Y4F5 1589 aaPredicted RBP3.09□□□□□ -1.92
BRCA1-220ENST00000492859 EDC4Q6P2E9 1401 aaKnown RBP3.09□□□□□ -1.92
BRCA1-220ENST00000492859 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TRAV17A0A0B4J275 112 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 DNAJC9-AS1A6NH13 148 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 INAFM1C9JVW0 142 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 KRTDAPP60985 99 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 RPL30P62888 115 aaKnown RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 RSPO1Q2MKA7 263 aaPredicted RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 C19orf48Q6RUI8 117 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TMEM256Q8N2U0 113 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 CD177Q8N6Q3 437 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 SLC25A29Q8N8R3 303 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 NRACQ8N912 160 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TVP23CQ96ET8 276 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 KLK13Q9UKR3 277 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 PLXNB3Q9ULL4 1909 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 USP54Q70EL1 1684 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 NESP48681 1621 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 NACAE9PAV3 2078 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TSC2P49815 1807 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TRAV2A0A0B4J234 112 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 A6NN06 94 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 SMIM13P0DJ93 91 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 FUSP35637 526 aaKnown RBP eCLIP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 UBE2AP49459 152 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 ATP5EP56381 51 aaPredicted RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 PCBD1P61457 104 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 HIST1H4AP62805 103 aaKnown RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 BLCAPP62952 87 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF816Q0VGE8 651 aaPredicted RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 ICAM4Q14773 271 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 CEMP1Q6PRD7 247 aaPredicted RBP3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TIFABQ6ZNK6 161 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 TMEM136Q6ZRR5 245 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 Q6ZSN1 163 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 SERP2Q8N6R1 65 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 DAND5Q8N907 189 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 AQP3Q92482 292 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 FAM104AQ969W3 186 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF714Q96N38 554 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 MGST2Q99735 147 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 CXCL16Q9H2A7 254 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 STRCP1A6NGW2 1772 aa3.08□□□□□ -1.92
BRCA1-220ENST00000492859 MYOM1P52179 1685 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 NFAT5O94916 1531 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 ATAD5Q96QE3 1844 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF736B4DX44 427 aaPredicted RBP3.07□□□□□ -1.92
BRCA1-220ENST00000492859 PEX7O00628 323 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 IGHV3-48P01763 117 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 HSPB1P04792 205 aaKnown RBP3.07□□□□□ -1.92
BRCA1-220ENST00000492859 CHTF8P0CG12 524 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 HOXB6P17509 224 aaKnown RBP3.07□□□□□ -1.92
BRCA1-220ENST00000492859 CIRBPQ14011 172 aaKnown RBP3.07□□□□□ -1.92
BRCA1-220ENST00000492859 SCRT2Q9NQ03 307 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 HIGD1BQ9P298 99 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 TAC3Q9UHF0 121 aa3.07□□□□□ -1.92
BRCA1-220ENST00000492859 AFDNP55196 1824 aaKnown RBP3.07□□□□□ -1.92
BRCA1-220ENST00000492859 THSD7BQ9C0I4 1608 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 MED1Q15648 1581 aaPredicted RBP3.06□□□□□ -1.92
BRCA1-220ENST00000492859 KRTAP23-1A1A580 65 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 IBA57-AS1B1ANH7 110 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 CCL16O15467 120 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 PLXNB1O43157 2135 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 CCKP06307 115 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 PRSS1P07477 247 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms