RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 SHANK2-AS3Q9BTD1 123 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 IGKV2-40A0A087WW87 121 aaPredicted RBP14.51□□□□□ -0.09
CCDC3-201ENST00000378825 C9orf118A6NHY6 69 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 K7EIM0 57 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 K7EMI3 77 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 IGKV2D-40P01614 121 aaPredicted RBP14.51□□□□□ -0.09
CCDC3-201ENST00000378825 MRPL51Q4U2R6 128 aaKnown RBP14.51□□□□□ -0.09
CCDC3-201ENST00000378825 BOD1L2Q8IYS8 172 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 NPYP01303 97 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 PLGLAQ15195 96 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 GFRALQ6UXV0 394 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 Q8TAT8 98 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 RBPJQ06330 500 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 ADAMTSL5Q6ZMM2 481 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 ZNF491Q8N8L2 437 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 ZNF414Q96IQ9 312 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 SCNM1Q9BWG6 230 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 MSRB1Q9NZV6 116 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 A0A0G2JLM5 398 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 FAM104BQ5XKR9 115 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 Q8NA96 180 aa14.5□□□□□ -0.09
CCDC3-201ENST00000378825 H3BRN7 92 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 SMAD7O15105 426 aaKnown RBP14.49□□□□□ -0.09
CCDC3-201ENST00000378825 MRPS12O15235 138 aaKnown RBP14.49□□□□□ -0.09
CCDC3-201ENST00000378825 SH2D1AO60880 128 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 AP1S3Q96PC3 154 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 IGF2RP11717 2491 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 IGHV3OR16-8A0A075B7F1 116 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 IGLV1-47P01700 117 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 C8orf31Q8N9H6 132 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 GATD1Q8NB37 220 aa14.49□□□□□ -0.09
CCDC3-201ENST00000378825 PTPRQQ9UMZ3 2332 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 A1L4Q6 167 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 CNIH1O95406 144 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 RNF125Q96EQ8 232 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 ZFHX3Q15911 3703 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 IGKV2D-26A0A0A0MRZ7 120 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 H3BRM9 83 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 PAX8Q06710 450 aa14.48□□□□□ -0.09
CCDC3-201ENST00000378825 IGHV3-23P01764 117 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 HLA-DMBP28068 263 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 ZNF80P51504 273 aaPredicted RBP14.47□□□□□ -0.09
CCDC3-201ENST00000378825 ZNF493Q6ZR52 646 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 ORMDL3Q8N138 153 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 TMEM189A5PLL7 270 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 BUB1B-PAK6H3BSN5 160 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 LGALS9BQ3B8N2 356 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 LGALS9CQ6DKI2 356 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 RNASE6Q93091 150 aaKnown RBP14.47□□□□□ -0.09
CCDC3-201ENST00000378825 IFI27L1Q96BM0 104 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 ATRXP46100 2492 aa14.47□□□□□ -0.09
CCDC3-201ENST00000378825 K7EP34 96 aa14.46□□□□□ -0.09
CCDC3-201ENST00000378825 CT45A10P0DMU9 189 aa14.46□□□□□ -0.09
CCDC3-201ENST00000378825 EGR2P11161 476 aaPredicted RBP14.46□□□□□ -0.09
CCDC3-201ENST00000378825 OR2K2Q8NGT1 345 aa14.46□□□□□ -0.09
CCDC3-201ENST00000378825 NPIPB5A8MRT5 1133 aa14.46□□□□□ -0.09
CCDC3-201ENST00000378825 NDUFS7O75251 213 aa14.46□□□□□ -0.09
CCDC3-201ENST00000378825 HBDP02042 147 aa14.46□□□□□ -0.09
CCDC3-201ENST00000378825 TRBV6-1A0A0K0K1D8 114 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 ZNF575Q86XF7 245 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 U3KQK5 164 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 A6NDN8 102 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 K7EQM0 130 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 K7ERJ3 54 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 CKS2P33552 79 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 TWIST1Q15672 202 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 DYNLRB1Q9NP97 96 aa14.45□□□□□ -0.1
CCDC3-201ENST00000378825 GATA1P15976 413 aaPredicted RBP14.44□□□□□ -0.1
CCDC3-201ENST00000378825 FOXC1Q12948 553 aa14.44□□□□□ -0.1
CCDC3-201ENST00000378825 GTF2H5Q6ZYL4 71 aa14.44□□□□□ -0.1
CCDC3-201ENST00000378825 IGHV3-35A0A0C4DH35 117 aa14.44□□□□□ -0.1
CCDC3-201ENST00000378825 HSD52Q0P140 79 aa14.44□□□□□ -0.1
CCDC3-201ENST00000378825 RPEQ96AT9 228 aa14.44□□□□□ -0.1
CCDC3-201ENST00000378825 WI2-2373I1.2A0A1W2PRP0 233 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 TMEM238C9JI98 176 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 G3V4G9 280 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 EVI2AP22794 236 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 PPIFP30405 207 aaKnown RBP14.43□□□□□ -0.1
CCDC3-201ENST00000378825 FXYD2P54710 66 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 VGLL1Q99990 258 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 SPCS1Q9Y6A9 102 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 TIMM23O14925 209 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 GOSR1O95249 250 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 PAX2Q02962 417 aa14.43□□□□□ -0.1
CCDC3-201ENST00000378825 A0A1W2PPM0 123 aa14.42□□□□□ -0.1
CCDC3-201ENST00000378825 OR1N2Q8NGR9 330 aa14.42□□□□□ -0.1
CCDC3-201ENST00000378825 A0A1B0GW15 77 aa14.42□□□□□ -0.1
CCDC3-201ENST00000378825 E7EQL1 145 aa14.42□□□□□ -0.1
CCDC3-201ENST00000378825 ZNF207O43670 478 aaKnown RBP14.42□□□□□ -0.1
CCDC3-201ENST00000378825 GCSHP23434 173 aa14.42□□□□□ -0.1
CCDC3-201ENST00000378825 ANKHD1Q8IWZ3 2542 aaKnown RBP14.41□□□□□ -0.1
CCDC3-201ENST00000378825 Q6AWC8 147 aa14.41□□□□□ -0.1
CCDC3-201ENST00000378825 DPF1Q92782 380 aa14.41□□□□□ -0.1
CCDC3-201ENST00000378825 KAAG1Q9UBP8 84 aa14.41□□□□□ -0.1
CCDC3-201ENST00000378825 AGRNO00468 2067 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 FBLL1A6NHQ2 334 aaKnown RBP14.4□□□□□ -0.1
CCDC3-201ENST00000378825 NEGR1Q7Z3B1 354 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 GNG7O60262 68 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 ASCL5Q7RTU5 278 aa14.4□□□□□ -0.1
CCDC3-201ENST00000378825 OR9G4Q8NGQ1 327 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms