RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 LPAR2Q9HBW0 351 aa16.96■□□□□ 0.31
SHMT1-202ENST00000352886 SERTM2A0A1B0GWG4 89 aa16.96■□□□□ 0.3
SHMT1-202ENST00000352886 DMRTA1Q5VZB9 504 aa16.96■□□□□ 0.3
SHMT1-202ENST00000352886 CHCHD1Q96BP2 118 aaKnown RBP16.96■□□□□ 0.3
SHMT1-202ENST00000352886 GNLYP22749 145 aa16.95■□□□□ 0.3
SHMT1-202ENST00000352886 RIGQ13278 110 aa16.95■□□□□ 0.3
SHMT1-202ENST00000352886 SMAD5-AS1Q9Y6J3 95 aa16.95■□□□□ 0.3
SHMT1-202ENST00000352886 CACNA1BQ00975 2339 aa16.95■□□□□ 0.3
SHMT1-202ENST00000352886 PIP4P2Q8N4L2 257 aa16.95■□□□□ 0.3
SHMT1-202ENST00000352886 IGHV1-24A0A0C4DH33 117 aa16.94■□□□□ 0.3
SHMT1-202ENST00000352886 RHOGP84095 191 aa16.94■□□□□ 0.3
SHMT1-202ENST00000352886 MAJINQ3KP22 176 aa16.94■□□□□ 0.3
SHMT1-202ENST00000352886 ZNF502Q8TBZ5 544 aa16.94■□□□□ 0.3
SHMT1-202ENST00000352886 NPFFO15130 113 aa16.93■□□□□ 0.3
SHMT1-202ENST00000352886 Q6AWC8 147 aa16.93■□□□□ 0.3
SHMT1-202ENST00000352886 IGFL4Q6B9Z1 124 aa16.93■□□□□ 0.3
SHMT1-202ENST00000352886 IGLC3P0DOY3 106 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 TMSB15BA0A087X1C1 80 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 LINC01548A6NM66 108 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 G3V318 75 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 CLEC3BP05452 202 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 ZNF138P52744 262 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 UQCR10Q9UDW1 63 aa16.92■□□□□ 0.3
SHMT1-202ENST00000352886 CENPVL3A0A0U1RRI6 287 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 SH2D1AO60880 128 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 HLA-DMBP28068 263 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 SPATA12Q7Z6I5 190 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 TMEM70Q9BUB7 260 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 ZFHX3Q15911 3703 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 TMEM189A5PLL7 270 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 GATD1Q8NB37 220 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 Q8TAT8 98 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 PRR25Q96S07 402 aa16.91■□□□□ 0.3
SHMT1-202ENST00000352886 A0A1B0GW15 77 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 SAPCD1Q5SSQ6 148 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 IGHG4P01861 327 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 S100A7P31151 101 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 KLHDC1Q8N7A1 406 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 VGLL1Q99990 258 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 ZFAND3Q9H8U3 227 aa16.9■□□□□ 0.3
SHMT1-202ENST00000352886 LEPROTL1O95214 131 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 CSN3P07498 182 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 LINC00173Q6ZV60 143 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 IGHV4-39P01824 125 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 BATFQ16520 125 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 KLK9Q2XQG4 91 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 LYZL1Q6UWQ5 148 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 CCDC140Q96MF4 163 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 KLK9Q9UKQ9 250 aa16.89■□□□□ 0.29
SHMT1-202ENST00000352886 CLEC19AQ6UXS0 136 aa16.88■□□□□ 0.29
SHMT1-202ENST00000352886 COX8CQ7Z4L0 72 aa16.88■□□□□ 0.29
SHMT1-202ENST00000352886 TRAV9-2A0A087WT02 112 aa16.88■□□□□ 0.29
SHMT1-202ENST00000352886 Q6ZN92 141 aa16.88■□□□□ 0.29
SHMT1-202ENST00000352886 C5orf56Q8N8D9 126 aa16.87■□□□□ 0.29
SHMT1-202ENST00000352886 ABCA2Q9BZC7 2435 aa16.87■□□□□ 0.29
SHMT1-202ENST00000352886 IGHV3OR16-10A0A075B7F0 116 aa16.87■□□□□ 0.29
SHMT1-202ENST00000352886 FBLL1A6NHQ2 334 aaKnown RBP16.87■□□□□ 0.29
SHMT1-202ENST00000352886 CRXO43186 299 aaPredicted RBP16.87■□□□□ 0.29
SHMT1-202ENST00000352886 TCF21O43680 179 aa16.87■□□□□ 0.29
SHMT1-202ENST00000352886 BUB3O43684 328 aa16.87■□□□□ 0.29
SHMT1-202ENST00000352886 GOSR1O95249 250 aa16.87■□□□□ 0.29
SHMT1-202ENST00000352886 TMEM219Q86XT9 240 aa16.86■□□□□ 0.29
SHMT1-202ENST00000352886 IGHV3-66A0A0C4DH42 116 aa16.86■□□□□ 0.29
SHMT1-202ENST00000352886 TMEM213A2RRL7 107 aa16.86■□□□□ 0.29
SHMT1-202ENST00000352886 SYS1-DBNDD2H3BUS1 97 aa16.86■□□□□ 0.29
SHMT1-202ENST00000352886 ZNF80P51504 273 aaPredicted RBP16.86■□□□□ 0.29
SHMT1-202ENST00000352886 ZNF493Q6ZR52 646 aa16.86■□□□□ 0.29
SHMT1-202ENST00000352886 TFPI2P48307 235 aa16.85■□□□□ 0.29
SHMT1-202ENST00000352886 HNRNPA3P51991 378 aaKnown RBP16.85■□□□□ 0.29
SHMT1-202ENST00000352886 VPS13CQ709C8 3753 aa16.85■□□□□ 0.29
SHMT1-202ENST00000352886 IGLL1P15814 213 aa16.85■□□□□ 0.29
SHMT1-202ENST00000352886 RAB9AP51151 201 aa16.85■□□□□ 0.29
SHMT1-202ENST00000352886 EEF1AKMT3Q96AZ1 226 aa16.85■□□□□ 0.29
SHMT1-202ENST00000352886 MUC21A0A0G2JKD1 596 aa16.84■□□□□ 0.29
SHMT1-202ENST00000352886 MUC21A0A140T8X8 626 aa16.84■□□□□ 0.29
SHMT1-202ENST00000352886 CLPSL1A2RUU4 121 aa16.84■□□□□ 0.29
SHMT1-202ENST00000352886 OR5AL1P0C617 328 aa16.84■□□□□ 0.29
SHMT1-202ENST00000352886 MUC21Q5SSG8 566 aa16.84■□□□□ 0.29
SHMT1-202ENST00000352886 OR4C46A6NHA9 309 aa16.84■□□□□ 0.29
SHMT1-202ENST00000352886 CELSR1Q9NYQ6 3014 aa16.83■□□□□ 0.29
SHMT1-202ENST00000352886 IGHV3OR16-13A0A075B7E8 117 aa16.83■□□□□ 0.28
SHMT1-202ENST00000352886 A0A087X0K7 114 aa16.83■□□□□ 0.28
SHMT1-202ENST00000352886 IGHV3-74A0A0B4J1X5 117 aa16.83■□□□□ 0.28
SHMT1-202ENST00000352886 BMI1P35226 326 aa16.83■□□□□ 0.28
SHMT1-202ENST00000352886 RNF182Q8N6D2 247 aa16.83■□□□□ 0.28
SHMT1-202ENST00000352886 AP5S1Q9NUS5 200 aa16.83■□□□□ 0.28
SHMT1-202ENST00000352886 C20orf202A1L168 122 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 PAX8Q06710 450 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 TIMM8BQ9Y5J9 83 aaPredicted RBP16.82■□□□□ 0.28
SHMT1-202ENST00000352886 TRBV7-1A0A0A6YYK4 115 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 PRAC2D3DTV9 90 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 ERCC8Q13216 396 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 COL5A1-AS1Q5SY13 56 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 AMN1Q8IY45 258 aa16.82■□□□□ 0.28
SHMT1-202ENST00000352886 SPTAN1Q13813 2472 aaKnown RBP16.82■□□□□ 0.28
SHMT1-202ENST00000352886 D6R8Y8 96 aa16.81■□□□□ 0.28
SHMT1-202ENST00000352886 BRD3OSQ6XYD6 125 aa16.81■□□□□ 0.28
SHMT1-202ENST00000352886 PRSS3P2Q8NHM4 247 aa16.81■□□□□ 0.28
SHMT1-202ENST00000352886 MOB4Q9Y3A3 225 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms