RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 A0A0G2JLM5 398 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 A1L4Q6 167 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 A6NDN8 102 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 K7EQM0 130 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 SMAD7O15105 426 aaKnown RBP17.61■□□□□ 0.41
TRIM28-202ENST00000341753 GTF2H5Q6ZYL4 71 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 H3BRM9 83 aa17.6■□□□□ 0.41
TRIM28-202ENST00000341753 CT45A10P0DMU9 189 aa17.6■□□□□ 0.41
TRIM28-202ENST00000341753 RBPJQ06330 500 aa17.6■□□□□ 0.41
TRIM28-202ENST00000341753 C8orf31Q8N9H6 132 aa17.6■□□□□ 0.41
TRIM28-202ENST00000341753 C18orf15Q96N68 181 aa17.6■□□□□ 0.41
TRIM28-202ENST00000341753 MRPL51Q4U2R6 128 aaKnown RBP17.6■□□□□ 0.41
TRIM28-202ENST00000341753 DKK2Q9UBU2 259 aa17.6■□□□□ 0.41
TRIM28-202ENST00000341753 TNFRSF13BO14836 293 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-202ENST00000341753 CNIH1O95406 144 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 FAM104BQ5XKR9 115 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 GATD1Q8NB37 220 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 ZNF414Q96IQ9 312 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 TMEM189A5PLL7 270 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 H3BRN7 92 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 ORMDL3Q8N138 153 aa17.59■□□□□ 0.41
TRIM28-202ENST00000341753 TTTY13Q9BZ97 58 aa17.58■□□□□ 0.41
TRIM28-202ENST00000341753 IGKV2-40A0A087WW87 121 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-202ENST00000341753 LYNX1G3V0Z9 82 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 K7EP34 96 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 SH2D1AO60880 128 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 NPYP01303 97 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 IGKV2D-40P01614 121 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-202ENST00000341753 LYNX1P0DP58 116 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 LGALS9BQ3B8N2 356 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 LGALS9CQ6DKI2 356 aa17.58■□□□□ 0.4
TRIM28-202ENST00000341753 SVEP1Q4LDE5 3571 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 K7EIM0 57 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 ADAMTSL5Q6ZMM2 481 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 ZNF491Q8N8L2 437 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 OR2K2Q8NGT1 345 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 TRBV6-1A0A0K0K1D8 114 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 HSD52Q0P140 79 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 ZNF493Q6ZR52 646 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 IFI27L1Q96BM0 104 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 RNF125Q96EQ8 232 aa17.57■□□□□ 0.4
TRIM28-202ENST00000341753 A0A1B0GW15 77 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 E7EQL1 145 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 HBDP02042 147 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 IGFL4Q6B9Z1 124 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 Q8TAT8 98 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 CKS2P33552 79 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 DYNLRB1Q9NP97 96 aa17.56■□□□□ 0.4
TRIM28-202ENST00000341753 GAS8-AS1O95177 125 aa17.55■□□□□ 0.4
TRIM28-202ENST00000341753 TWIST1Q15672 202 aa17.55■□□□□ 0.4
TRIM28-202ENST00000341753 OR1N2Q8NGR9 330 aa17.55■□□□□ 0.4
TRIM28-202ENST00000341753 BUB1B-PAK6H3BSN5 160 aa17.55■□□□□ 0.4
TRIM28-202ENST00000341753 Q6AWC8 147 aa17.55■□□□□ 0.4
TRIM28-202ENST00000341753 RNASE6Q93091 150 aaKnown RBP17.55■□□□□ 0.4
TRIM28-202ENST00000341753 SPCS1Q9Y6A9 102 aa17.55■□□□□ 0.4
TRIM28-202ENST00000341753 MRPS12O15235 138 aaKnown RBP17.54■□□□□ 0.4
TRIM28-202ENST00000341753 NDUFS7O75251 213 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 IGLV1-47P01700 117 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 JKAMPQ9P055 326 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 U3KQK5 164 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 SHISA9B4DS77 424 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 RPEQ96AT9 228 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 MSRB1Q9NZV6 116 aa17.54■□□□□ 0.4
TRIM28-202ENST00000341753 ASH1LQ9NR48 2969 aaKnown RBP17.53■□□□□ 0.4
TRIM28-202ENST00000341753 GRNP28799 593 aaKnown RBP17.53■□□□□ 0.4
TRIM28-202ENST00000341753 LINC01560Q8TB33 94 aa17.53■□□□□ 0.4
TRIM28-202ENST00000341753 DPF1Q92782 380 aa17.53■□□□□ 0.4
TRIM28-202ENST00000341753 G3V4G9 280 aa17.53■□□□□ 0.4
TRIM28-202ENST00000341753 PAX2Q02962 417 aa17.53■□□□□ 0.4
TRIM28-202ENST00000341753 TMEM238C9JI98 176 aa17.52■□□□□ 0.4
TRIM28-202ENST00000341753 K7EMI3 77 aa17.52■□□□□ 0.4
TRIM28-202ENST00000341753 EGR2P11161 476 aaPredicted RBP17.52■□□□□ 0.4
TRIM28-202ENST00000341753 PAX8Q06710 450 aa17.52■□□□□ 0.4
TRIM28-202ENST00000341753 OR9G4Q8NGQ1 327 aa17.52■□□□□ 0.4
TRIM28-202ENST00000341753 A0A1W2PPM0 123 aa17.52■□□□□ 0.39
TRIM28-202ENST00000341753 IGHV3-23P01764 117 aa17.52■□□□□ 0.39
TRIM28-202ENST00000341753 AAMDCQ9H7C9 122 aa17.52■□□□□ 0.39
TRIM28-202ENST00000341753 IGKV2D-26A0A0A0MRZ7 120 aa17.51■□□□□ 0.39
TRIM28-202ENST00000341753 NPIPB5A8MRT5 1133 aa17.51■□□□□ 0.39
TRIM28-202ENST00000341753 GCSHP23434 173 aa17.51■□□□□ 0.39
TRIM28-202ENST00000341753 IGHV3OR16-8A0A075B7F1 116 aa17.51■□□□□ 0.39
TRIM28-202ENST00000341753 ZNF80P51504 273 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-202ENST00000341753 K7ERJ3 54 aa17.5■□□□□ 0.39
TRIM28-202ENST00000341753 COL6A6A6NMZ7 2263 aa17.5■□□□□ 0.39
TRIM28-202ENST00000341753 ANKHD1Q8IWZ3 2542 aaKnown RBP17.5■□□□□ 0.39
TRIM28-202ENST00000341753 HLA-DMBP28068 263 aa17.5■□□□□ 0.39
TRIM28-202ENST00000341753 FAM90A27PA6NNH2 459 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 EVI2AP22794 236 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 LYPD1Q8N2G4 141 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 OR4X2Q8NGF9 303 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 GNG7O60262 68 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 WI2-2373I1.2A0A1W2PRP0 233 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 TIMM23O14925 209 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 FXYD2P54710 66 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 KAAG1Q9UBP8 84 aa17.49■□□□□ 0.39
TRIM28-202ENST00000341753 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-202ENST00000341753 VGLL1Q99990 258 aa17.48■□□□□ 0.39
TRIM28-202ENST00000341753 RALYQ9UKM9 306 aaKnown RBP17.48■□□□□ 0.39
TRIM28-202ENST00000341753 SPTBN4Q9H254 2564 aa17.48■□□□□ 0.39
TRIM28-202ENST00000341753 PPIFP30405 207 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms