RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MUC21A0A140T8X8 626 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 CSN3P07498 182 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 PSG9Q00887 426 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 MUC21Q5SSG8 566 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 ZNF502Q8TBZ5 544 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 ABCA2Q9BZC7 2435 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 CTRLP40313 264 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 RELQ04864 619 aaPredicted RBP14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 CLEC19AQ6UXS0 136 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 VGLL1Q99990 258 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 LINC00527Q9UJ94 153 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 C2orf70A6NJV1 201 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 LINC00173Q6ZV60 143 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 SPATA12Q7Z6I5 190 aa14.25□□□□□ -0.13
SHKBP1-201ENST00000291842 SCGB2A1O75556 95 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 IGHG4P01861 327 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 BRD3OSQ6XYD6 125 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 IGHV3-49A0A0A0MS15 119 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 IGHV1-24A0A0C4DH33 117 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 SH2D1AO60880 128 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 BTF3P20290 206 aaKnown RBP14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 SPG11Q96JI7 2443 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 TXN2Q99757 166 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 NDFIP1Q9BT67 221 aa14.24□□□□□ -0.13
SHKBP1-201ENST00000291842 BATFQ16520 125 aa14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 CCDC140Q96MF4 163 aa14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 TIMM8BQ9Y5J9 83 aaPredicted RBP14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 ZNF207O43670 478 aaKnown RBP14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 LINC00614P0C842 121 aa14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 NUTF2P61970 127 aaKnown RBP14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 RIGQ13278 110 aa14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 RNF182Q8N6D2 247 aa14.23□□□□□ -0.13
SHKBP1-201ENST00000291842 PIEZO1Q92508 2521 aa14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 TMEM189A5PLL7 270 aa14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 LYZL1Q6UWQ5 148 aa14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 PRR25Q96S07 402 aa14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 ZFAND3Q9H8U3 227 aa14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 CELSR2Q9HCU4 2923 aa14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 ZNF80P51504 273 aaPredicted RBP14.22□□□□□ -0.13
SHKBP1-201ENST00000291842 TMEM213A2RRL7 107 aa14.21□□□□□ -0.13
SHKBP1-201ENST00000291842 ERCC8Q13216 396 aa14.21□□□□□ -0.13
SHKBP1-201ENST00000291842 FAM162BQ5T6X4 162 aa14.21□□□□□ -0.13
SHKBP1-201ENST00000291842 C5orf56Q8N8D9 126 aa14.21□□□□□ -0.13
SHKBP1-201ENST00000291842 FLNCQ14315 2725 aa14.21□□□□□ -0.13
SHKBP1-201ENST00000291842 IGHV4-61A0A0C4DH41 118 aa14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 SERTM2A0A1B0GWG4 89 aa14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 CRYBG3Q68DQ2 2970 aa14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 PRAC2D3DTV9 90 aa14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 BUB3O43684 328 aa14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 TMEM190Q8WZ59 177 aa14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 CHCHD1Q96BP2 118 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 UTP20O75691 2785 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-201ENST00000291842 TRAV40A0A0B4J280 105 aa14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 IGLC3P0DOY3 106 aa14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 CLPSL1A2RUU4 121 aa14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 LEPROTL1O95214 131 aa14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 GOSR1O95249 250 aa14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 TMEM70Q9BUB7 260 aa14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 MCRIP2Q9BUT9 160 aaKnown RBP14.19□□□□□ -0.14
SHKBP1-201ENST00000291842 TCAPO15273 167 aa14.18□□□□□ -0.14
SHKBP1-201ENST00000291842 SAPCD1Q5SSQ6 148 aa14.18□□□□□ -0.14
SHKBP1-201ENST00000291842 H0Y8G0 127 aa14.18□□□□□ -0.14
SHKBP1-201ENST00000291842 PAX8Q06710 450 aa14.18□□□□□ -0.14
SHKBP1-201ENST00000291842 Q6ZN92 141 aa14.18□□□□□ -0.14
SHKBP1-201ENST00000291842 EEF1AKMT3Q96AZ1 226 aa14.17□□□□□ -0.14
SHKBP1-201ENST00000291842 CCL19Q99731 98 aa14.17□□□□□ -0.14
SHKBP1-201ENST00000291842 UQCR10Q9UDW1 63 aa14.17□□□□□ -0.14
SHKBP1-201ENST00000291842 AMN1Q8IY45 258 aa14.17□□□□□ -0.14
SHKBP1-201ENST00000291842 PIFOQ8TCI5 191 aa14.17□□□□□ -0.14
SHKBP1-201ENST00000291842 CSMD2Q7Z408 3487 aa14.17□□□□□ -0.14
SHKBP1-201ENST00000291842 Q6AWC8 147 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 IGHV1-69DA0A0B4J2H0 117 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 IGHV1-69P01742 117 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 IGHV4-38-2P0DP08 117 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 IGLL1P15814 213 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 G0S2P27469 103 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 LY6EQ16553 131 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 IGSF10Q6WRI0 2623 aa14.16□□□□□ -0.14
SHKBP1-201ENST00000291842 TRAV9-2A0A087WT02 112 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 LOC389332A0A1B0GUA5 103 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 D6R8Y8 96 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 SYS1-DBNDD2H3BUS1 97 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 PIMREGQ9BSJ6 248 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 MOB4Q9Y3A3 225 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 TRAV41A0A0B4J266 112 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 ORM1P02763 201 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 ATP5G2Q06055 141 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 FAM106AQ4KMX7 169 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 ZNF575Q86XF7 245 aa14.15□□□□□ -0.14
SHKBP1-201ENST00000291842 A0A1B0GW15 77 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 OR4C46A6NHA9 309 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 M0QZK8 103 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 KLHDC1Q8N7A1 406 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 GATD1Q8NB37 220 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 PRSS3P2Q8NHM4 247 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 TP73-AS1Q9UF72 201 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 TRBV7-1A0A0A6YYK4 115 aa14.14□□□□□ -0.15
SHKBP1-201ENST00000291842 S100A7P31151 101 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms