RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 AKAP11Q9UKA4 1901 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 COL1A1P02452 1464 aaPredicted RBP4.1□□□□□ -1.75
VPS29-210ENST00000552130 MAGI1Q96QZ7 1491 aaPredicted RBP4.1□□□□□ -1.75
VPS29-210ENST00000552130 RIMBP3CA6NJZ7 1639 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 RIMBP3BA6NNM3 1639 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 RIMBP3Q9UFD9 1639 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 BRWD3Q6RI45 1802 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 OR51F1A6NGY5 319 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 APOC4-APOC2K7ER74 178 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 SDCBPO00560 298 aaPredicted RBP4.09□□□□□ -1.75
VPS29-210ENST00000552130 LINC01565O15544 149 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 CREBL2O60519 120 aaPredicted RBP4.09□□□□□ -1.75
VPS29-210ENST00000552130 PITX3O75364 302 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 IGLV1-47P01700 117 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 APOC2P02655 101 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 RBP4P02753 201 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 CD3DP04234 171 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 ZNF705BP0CI00 300 aaPredicted RBP4.09□□□□□ -1.75
VPS29-210ENST00000552130 RPL28P46779 137 aaKnown RBP4.09□□□□□ -1.75
VPS29-210ENST00000552130 RPL26L1Q9UNX3 145 aaKnown RBP4.09□□□□□ -1.75
VPS29-210ENST00000552130 SERP1Q9Y6X1 66 aa4.09□□□□□ -1.75
VPS29-210ENST00000552130 KIAA1551Q9HCM1 1747 aa4.09□□□□□ -1.76
VPS29-210ENST00000552130 PHIPQ8WWQ0 1821 aa4.09□□□□□ -1.76
VPS29-210ENST00000552130 SCN8AQ9UQD0 1980 aa4.09□□□□□ -1.76
VPS29-210ENST00000552130 KIF26BQ2KJY2 2108 aa4.09□□□□□ -1.76
VPS29-210ENST00000552130 IGKV1D-37A0A075B6S9 117 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 A0A096LNJ9 63 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 TRBV6-6A0A0A6YYG2 114 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 C3orf85A0A1B0GTC6 90 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 TCRBV3S1A0A5B6 114 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 YPEL1O60688 119 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 SLC25A4P12235 298 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 FABP4P15090 132 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 NFYAP23511 347 aaPredicted RBP4.08□□□□□ -1.76
VPS29-210ENST00000552130 CD24P25063 80 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 FUSP35637 526 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS29-210ENST00000552130 NUP98P52948 1817 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 PCBD1P61457 104 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 FAM229BQ4G0N7 80 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 CROCCQ5TZA2 2017 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 Q6ZQT7 251 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 Q8N2B8 174 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 RPRMLQ8N4K4 120 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 OR4X2Q8NGF9 303 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 FGF13Q92913 245 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 CHCHD1Q96BP2 118 aaKnown RBP4.08□□□□□ -1.76
VPS29-210ENST00000552130 MRPS24Q96EL2 167 aaKnown RBP4.08□□□□□ -1.76
VPS29-210ENST00000552130 RNF5Q99942 180 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 BCL2L10Q9HD36 194 aa4.08□□□□□ -1.76
VPS29-210ENST00000552130 ZNF318Q5VUA4 2279 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 MYH13Q9UKX3 1938 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 C17orf98A8MV24 154 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 MCRIP1C9JLW8 97 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 TIMM17BO60830 172 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 ZNF846Q147U1 533 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 DEFB116Q30KQ4 102 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.07□□□□□ -1.76
VPS29-210ENST00000552130 LCE1FQ5T754 118 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 Q5W150 140 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 IGFL3Q6UXB1 125 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 Q6ZR03 302 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 OR5AS1Q8N127 324 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 DYNAPQ8N1N2 210 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 CYB561D1Q8N8Q1 229 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 TMEM105Q8N8V8 129 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 C1orf64Q8NEQ6 169 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 LCN9Q8WX39 176 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 AQP3Q92482 292 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 DPY30Q9C005 99 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 MYO10Q9HD67 2058 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 SCN9AQ15858 1988 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 WNK3Q9BYP7 1800 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 KIF13AQ9H1H9 1805 aa4.07□□□□□ -1.76
VPS29-210ENST00000552130 ARHGEF28Q8N1W1 1705 aaKnown RBP4.07□□□□□ -1.76
VPS29-210ENST00000552130 QRICH2Q9H0J4 1663 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 NRKQ7Z2Y5 1582 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 ERICH3Q5RHP9 1530 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 CFTRP13569 1480 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 TRGV5A0A0B4J1U4 118 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 K7EM74 188 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 ZNF737O75373 536 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 TRACP01848 142 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 CRYGAP11844 174 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 CCL4P13236 92 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 SS18Q15532 418 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 Q6AWC8 147 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 Q8NDZ9 215 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 OTOSQ8NHW6 89 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 RAB37Q96AX2 223 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 LTBP1Q14766 1721 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 BCORL1Q5H9F3 1711 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 TRPM1Q7Z4N2 1603 aa4.06□□□□□ -1.76
VPS29-210ENST00000552130 ZFC3H1O60293 1989 aaKnown RBP4.05□□□□□ -1.76
VPS29-210ENST00000552130 CEP162Q5TB80 1403 aa4.05□□□□□ -1.76
VPS29-210ENST00000552130 LOC107986453A0A1B0GWG9 222 aa4.05□□□□□ -1.76
VPS29-210ENST00000552130 A0A1W2PRS3 328 aa4.05□□□□□ -1.76
VPS29-210ENST00000552130 C7orf66A4D0T2 115 aa4.05□□□□□ -1.76
VPS29-210ENST00000552130 H3BQ85 93 aa4.05□□□□□ -1.76
VPS29-210ENST00000552130 SAA1P0DJI8 122 aaPredicted RBP4.05□□□□□ -1.76
VPS29-210ENST00000552130 ZNF117Q03924 483 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms