RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 TRBV9A0A0B4J1U6 114 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 C11orf94C9JXX5 98 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 PAGE4O60829 102 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 OR2C1O95371 312 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 TPPP2P59282 170 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 UBE2L3P68036 154 aaKnown RBP5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 C10orf91Q5T1B1 145 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 C19orf35Q6ZS72 473 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 Q8N2B8 174 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 RNF125Q96EQ8 232 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 TVP23CQ96ET8 276 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 RARRES2Q99969 163 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 TCEAL7Q9BRU2 100 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 GNB4Q9HAV0 340 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 SEPSECSQ9HD40 501 aaKnown RBP5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 RABAC1Q9UI14 185 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 DMRT1Q9Y5R6 373 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 TSSC4Q9Y5U2 329 aaPredicted RBP5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 CSMD3Q7Z407 3707 aa5.47□□□□□ -1.53
DEPDC4-208ENST00000549341 A0A1W2PRE2 83 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 SH2D7A6NKC9 451 aaPredicted RBP5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 ZNF727A8MUV8 499 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 B4DEV8 164 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 G3V318 75 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 M0R036 132 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 TGOLN2O43493 480 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 AMY1AP04745 511 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 IL4P05112 153 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 BMI1P35226 326 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 UBE2G2P60604 165 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 SRSF3P84103 164 aaKnown RBP5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 RHEBQ15382 184 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 TCTEX1D4Q5JR98 221 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 SSX7Q7RTT5 188 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 BPIFA4PQ86YQ2 179 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 OR4X2Q8NGF9 303 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 ZNF502Q8TBZ5 544 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 TMEM37Q8WXS4 190 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 MS4A10Q96PG2 267 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 TMPRSS5Q9H3S3 457 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 MRPL36Q9P0J6 103 aaKnown RBP5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 TMEM14CQ9P0S9 112 aa5.46□□□□□ -1.54
DEPDC4-208ENST00000549341 KIAA1109Q2LD37 5005 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 PSMB11A5LHX3 300 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 OR2T8A6NH00 312 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 IGKV1-17P01599 117 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 CLEC3BP05452 202 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 ELANEP08246 267 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 HIST1H1EP10412 219 aaKnown RBP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 RPL7P18124 248 aaKnown RBP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 PPIFP30405 207 aaKnown RBP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 GPR183P32249 361 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 BLCAPP62952 87 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 TMEM241Q24JQ0 296 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 C19orf54Q5BKX5 351 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 SPATA31B1PQ5VZV4 182 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 TEX38Q6PEX7 206 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 C10orf99Q6UWK7 81 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 CLEC19AQ6UXS0 136 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 ZNF491Q8N8L2 437 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 CYB561D1Q8N8Q1 229 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 CLRN3Q8NCR9 226 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 GPR82Q96P67 336 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 METTL26Q96S19 204 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 SMIM7Q9BQ49 75 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 SHANK2-AS3Q9BTD1 123 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 MCRIP2Q9BUT9 160 aaKnown RBP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 SCRT1Q9BWW7 348 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 SLC25A2Q9BXI2 301 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 SLC25A39Q9BZJ4 359 aaPredicted RBP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 MRPL27Q9P0M9 148 aaKnown RBP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 NAT8Q9UHE5 227 aa5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 PUS1Q9Y606 427 aaKnown RBP eCLIP5.45□□□□□ -1.54
DEPDC4-208ENST00000549341 ALMS1Q8TCU4 4167 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 A0A1W2PS18 150 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 FAM74A7A6NL05 159 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 LINC01548A6NM66 108 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 C9JQL5 133 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 H3BQ15 152 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 H3BRN7 92 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 H3BS24 57 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 GGCTO75223 188 aaKnown RBP5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 IGHV3-23P01764 117 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 IGHG4P01861 327 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 S100A9P06702 114 aaKnown RBP5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 CTSGP08311 255 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 NBEAP1P0C6P0 100 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 NPPCP23582 126 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 ARL3P36405 182 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 MEOX2P50222 304 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 CD81P60033 236 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 FOXE3Q13461 319 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 ZNF674Q2M3X9 581 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 PATE2Q6UY27 113 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 LYPD1Q8N2G4 141 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 CMTM2Q8TAZ6 248 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 GRAMD2BQ96HH9 432 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 RPS10P5Q9NQ39 176 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 SMCO4Q9NRQ5 59 aa5.44□□□□□ -1.54
DEPDC4-208ENST00000549341 ZMAT5Q9UDW3 170 aaKnown RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms