RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MLH3Q9UHC1 1453 aa0.61□□□□□ -2.31
VPS50-219ENST00000495039 WDR97A6NE52 1622 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 TOP2BQ02880 1626 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 HMGXB3Q12766 1538 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 EHBP1L1Q8N3D4 1523 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 TAF1LQ8IZX4 1826 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 MAP1LC3B2A6NCE7 125 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 A8MWV9 139 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 MIF4GDA9UHW6 222 aaKnown RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 E7EQ34 232 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 M0R2N4 97 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 PGRMC1O00264 195 aaKnown RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 GNGT2O14610 69 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 NDUFB3O43676 98 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 IFNA21P01568 189 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C1QBP02746 253 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 IFNA4P05014 189 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 UBE2BP63146 152 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 WHAMMP3Q1A5X7 153 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 BRMS1LQ5PSV4 323 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C22orf39Q6P5X5 142 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C4orf22Q6V702 233 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C3orf62Q6ZUJ4 267 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 CTAGE3PQ8IX95 158 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 SMIM20Q8N5G0 67 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 TMEM35BQ8NCS4 154 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 SLC30A7Q8NEW0 376 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 OR52R1Q8NGF1 315 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 OR10J5Q8NHC4 309 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C4orf3Q8WVX3 66 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 ISOC1Q96CN7 298 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 SLAMF6Q96DU3 332 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 TEX37Q96LM6 180 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 ZNF714Q96N38 554 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 LYSMD1Q96S90 227 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 HOPXQ9BPY8 73 aaPredicted RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 SLC25A21Q9BQT8 299 aaPredicted RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 LINC00467Q9BRT7 94 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 PRADC1Q9BSG0 188 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 CCDC32Q9BV29 185 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 MAP1LC3BQ9GZQ8 125 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C14orf132Q9NPU4 83 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 MED29Q9NX70 200 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 SS18L2Q9UHA2 77 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 PCTPQ9UKL6 214 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 HS3ST2Q9Y278 367 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 Q9Y3F1 56 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 LY96Q9Y6Y9 160 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 BLMP54132 1417 aaPredicted RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 CPSF1Q10570 1443 aaKnown RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 SYNJ1O43426 1573 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 SBF1O95248 1867 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 ZNF106Q9H2Y7 1883 aaKnown RBP0.6□□□□□ -2.31
VPS50-219ENST00000495039 PZPP20742 1482 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 C1orf167Q5SNV9 1468 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 RALGAPBQ86X10 1494 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 NLRP1Q9C000 1473 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 CD163L1Q9NR16 1453 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 DENND4CQ5VZ89 1909 aa0.6□□□□□ -2.31
VPS50-219ENST00000495039 ABCC1P33527 1531 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 MAGI3Q5TCQ9 1506 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 ASXL1Q8IXJ9 1541 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 ARHGEF12Q9NZN5 1544 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 CPDO75976 1380 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 ADGRB2O60241 1585 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 PCF11O94913 1555 aaKnown RBP0.59□□□□□ -2.31
VPS50-219ENST00000495039 TIAM1Q13009 1591 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 IQGAP2Q13576 1575 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 PEG3Q9GZU2 1588 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 UGGT1Q9NYU2 1555 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 ANKARQ7Z5J8 1434 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 TRAV3A0A0B4J244 114 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 TSTD3H0UI37 97 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 H0YJX3 145 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 GPR31O00270 319 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 TIMM17BO60830 172 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 SMIM24O75264 130 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 FAM107AO95990 144 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 PAEPP09466 180 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 CYBAP13498 195 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 HLA-EP13747 358 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 KDELR1P24390 212 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 S100GP29377 79 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 SRIP30626 198 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 SDC4P31431 198 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 CRYBA4P53673 196 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 NDUFA6P56556 154 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 DYNLT1P63172 113 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 GNGT1P63211 74 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 ESRGQ1W209 222 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 C1orf137Q5JT78 98 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 C2orf82Q6UX34 121 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 PDZD9Q8IXQ8 264 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 DEFB106AQ8N104 65 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 MMGT1Q8N4V1 131 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 NUP35Q8NFH5 326 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 OR5D16Q8NGK9 328 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 OR2T35Q8NGX2 323 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 OR4K15Q8NH41 348 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 TMEM254Q8TBM7 123 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms