RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CEACAM3P40198 252 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 MZT1Q08AG7 82 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 BOD1L2Q8IYS8 172 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 STXBP6Q8NFX7 210 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 PEF1Q9UBV8 284 aaKnown RBP6.91□□□□□ -1.3
USP40-203ENST00000427112 IGKV2-40A0A087WW87 121 aaPredicted RBP6.91□□□□□ -1.3
USP40-203ENST00000427112 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.91□□□□□ -1.3
USP40-203ENST00000427112 C17orf100A8MU93 164 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 IGKV2D-40P01614 121 aaPredicted RBP6.91□□□□□ -1.3
USP40-203ENST00000427112 IL4P05112 153 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 KIR2DS2P43631 304 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 PRSS3P2Q8NHM4 247 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 CSTL1Q9H114 145 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 ABCA12Q86UK0 2595 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 TCRBV4S1A1TA0A5B7 111 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 C7orf71A4D174 169 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 C16orf97H3BN30 126 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 OR2J3O76001 311 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 APOHP02749 345 aaPredicted RBP6.91□□□□□ -1.3
USP40-203ENST00000427112 C11orf52Q96A22 123 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 MBD6Q96DN6 1003 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 URB1-AS1Q96HZ7 61 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 IGHV1-24A0A0C4DH33 117 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 SMIM27A0A1W2PRY6 76 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 A6NDN8 102 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 EVI2AP22794 236 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 Q0VG73 95 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 VMA21Q3ZAQ7 101 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 RPEQ96AT9 228 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 K7EP13 123 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 C2orf83Q53S99 150 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 LCNL1Q6ZST4 164 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 TMEM133Q9H2Q1 129 aa6.9□□□□□ -1.3
USP40-203ENST00000427112 ZANQ9Y493 2812 aa6.9□□□□□ -1.31
USP40-203ENST00000427112 TRAV26-1A0A087WT03 109 aa6.9□□□□□ -1.31
USP40-203ENST00000427112 A0A1B0GWB2 263 aa6.9□□□□□ -1.31
USP40-203ENST00000427112 TMPRSS3P57727 454 aa6.9□□□□□ -1.31
USP40-203ENST00000427112 PLA2G2CQ5R387 149 aa6.9□□□□□ -1.31
USP40-203ENST00000427112 TMEM70Q9BUB7 260 aa6.9□□□□□ -1.31
USP40-203ENST00000427112 AZU1P20160 251 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 SUB1P53999 127 aaKnown RBP eCLIP6.89□□□□□ -1.31
USP40-203ENST00000427112 RBX1P62877 108 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 HBBP68871 147 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 GUSBP1Q15486 140 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 FAM169BQ8N8A8 192 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 ZNF418Q8TF45 676 aaPredicted RBP6.89□□□□□ -1.31
USP40-203ENST00000427112 GRAMD2BQ96HH9 432 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 ADTRPQ96IZ2 230 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 RASL11BQ9BPW5 248 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 RPP21Q9H633 154 aaKnown RBP6.89□□□□□ -1.31
USP40-203ENST00000427112 CELSR2Q9HCU4 2923 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 IGLV3-9A0A075B6K5 115 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 NPIPB5A8MRT5 1133 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 PRRG2O14669 202 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 GAS8-AS1O95177 125 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 DEFB1P60022 68 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 AMN1Q8IY45 258 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 OR2K2Q8NGT1 345 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 VSTM2AQ8TAG5 236 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 MSRB1Q9NZV6 116 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 H7C2G1 150 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 NDUFS7O75251 213 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 LOXP28300 417 aaPredicted RBP6.89□□□□□ -1.31
USP40-203ENST00000427112 IFI27P40305 119 aaPredicted RBP6.89□□□□□ -1.31
USP40-203ENST00000427112 FA2HQ7L5A8 372 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 SMIM20Q8N5G0 67 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 GPR82Q96P67 336 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 ANAPC13Q9BS18 74 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 HIGD1AQ9Y241 93 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 LINC00312Q9Y6C7 94 aa6.89□□□□□ -1.31
USP40-203ENST00000427112 LOC105371242A0A075B767 164 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 TRAV9-2A0A087WT02 112 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 PPIAL4CA0A0B4J2A2 164 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 MT-ND6P03923 174 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 TCRAP04437 139 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 PPIAL4GP0DN37 164 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 GATA1P15976 413 aaPredicted RBP6.88□□□□□ -1.31
USP40-203ENST00000427112 CTRLP40313 264 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 FOXC1Q12948 553 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 ORAOV1Q8WV07 137 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 TIMM23O14925 209 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 TTC32Q5I0X7 151 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 Q6ZQT7 251 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 KLK15Q9H2R5 256 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 GEMIN7Q9H840 131 aaKnown RBP6.88□□□□□ -1.31
USP40-203ENST00000427112 IGLC7A0M8Q6 106 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 C2orf70A6NJV1 201 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 TMEM178BH3BS89 294 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 THBDP07204 575 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 MC5RP33032 325 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 GAGE1Q13065 139 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 OR10J3Q5JRS4 329 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 C3orf56Q8N813 242 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 OSR1Q8TAX0 266 aaPredicted RBP6.88□□□□□ -1.31
USP40-203ENST00000427112 TXNDC17Q9BRA2 123 aa6.88□□□□□ -1.31
USP40-203ENST00000427112 TRAV30A0A087WSZ9 112 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 E7EQL1 145 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 IGLV2-23P01705 113 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 IGHV1-8P0DP01 117 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 PSG9Q00887 426 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms