RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 COL11A2P13942 1736 aaPredicted RBP12.11□□□□□ -0.47
SCN3B-201ENST00000299333 LINC00205P59089 165 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 TEX48A0A1B0GUV7 120 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 A0A1W2PR77 199 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 PSPNO60542 156 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 COX8AP10176 69 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 TMEM190Q8WZ59 177 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 CARD19Q96LW7 228 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 LTBP4Q8N2S1 1624 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 LINC00473A8K010 186 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 TP53TG1Q9Y2A0 90 aa12.11□□□□□ -0.47
SCN3B-201ENST00000299333 IGHV2-5P01817 119 aa12.1□□□□□ -0.47
SCN3B-201ENST00000299333 SP9P0CG40 484 aa12.1□□□□□ -0.47
SCN3B-201ENST00000299333 MLANAQ16655 118 aa12.1□□□□□ -0.47
SCN3B-201ENST00000299333 WFDC9Q8NEX5 89 aa12.1□□□□□ -0.47
SCN3B-201ENST00000299333 OR11H6Q8NGC7 330 aa12.1□□□□□ -0.47
SCN3B-201ENST00000299333 C11orf44Q8N8P7 122 aa12.1□□□□□ -0.47
SCN3B-201ENST00000299333 SPATA25Q9BR10 227 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 ARHGEF17Q96PE2 2063 aaPredicted RBP12.09□□□□□ -0.47
SCN3B-201ENST00000299333 IGHV2-26A0A0B4J1V2 119 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 IGHV1-24A0A0C4DH33 117 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 CYYR1Q96J86 154 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 LINC00477Q96M19 166 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 PRSS22Q9GZN4 317 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 ZNF581Q9P0T4 197 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 PRSS29PA6NIE9 313 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 HOXD3P31249 432 aaPredicted RBP12.09□□□□□ -0.47
SCN3B-201ENST00000299333 C9orf139Q6ZV77 190 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 SHANK3Q9BYB0 1731 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 IGHV1-18A0A0C4DH31 117 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 CEND1Q8N111 149 aa12.09□□□□□ -0.47
SCN3B-201ENST00000299333 TDRD15B5MCY1 1934 aaKnown RBP12.08□□□□□ -0.48
SCN3B-201ENST00000299333 TINCRA0A1B0GVN0 87 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 Q6ZRM9 215 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 FAM236AA0A1B0GUQ0 79 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 FAM236BA0A1B0GV22 79 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 SH2D6Q7Z4S9 175 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 A0A1B0GX51 115 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 C2orf66Q6UXQ4 117 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 LYPD1Q8N2G4 141 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 MMP23AO75900 390 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 LTBRP36941 435 aa12.08□□□□□ -0.48
SCN3B-201ENST00000299333 IGHV1-46P01743 117 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 METRNQ9UJH8 293 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 SBF2Q86WG5 1849 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 IGHV1-3A0A0C4DH29 117 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 NBL1P41271 181 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 COL4A5P29400 1685 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 RALGAPA1Q6GYQ0 2036 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 C5orf63A6NC05 138 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 TMEM200BQ69YZ2 307 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 TMEM219Q86XT9 240 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 CD177Q8N6Q3 437 aa12.07□□□□□ -0.48
SCN3B-201ENST00000299333 MRPS18CQ9Y3D5 142 aaKnown RBP12.07□□□□□ -0.48
SCN3B-201ENST00000299333 IGHG3P01860 377 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 IGHG4P01861 327 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 RTTNQ86VV8 2226 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 C8orf49Q96NF6 230 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 ARID2Q68CP9 1835 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 FAM104BQ5XKR9 115 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 GREB1LQ9C091 1923 aaPredicted RBP12.06□□□□□ -0.48
SCN3B-201ENST00000299333 TRAV12-2A0A075B6T6 113 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 PFN2P35080 140 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 FOXG1P55316 489 aaPredicted RBP12.06□□□□□ -0.48
SCN3B-201ENST00000299333 PRO1854Q9UHT4 67 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 COL11A1P12107 1806 aaPredicted RBP12.06□□□□□ -0.48
SCN3B-201ENST00000299333 NRXN2Q9P2S2 1712 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 H0YJW9 148 aa12.06□□□□□ -0.48
SCN3B-201ENST00000299333 ANKRD36A6QL64 1941 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 QRFPP83859 136 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 Q8N8P6 123 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 ATOX1O00244 68 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 IGHV1-8P0DP01 117 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 EGR2P11161 476 aaPredicted RBP12.05□□□□□ -0.48
SCN3B-201ENST00000299333 VWC2Q2TAL6 325 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 IGHV2-70DA0A0C4DH43 119 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 SRRM5B3KS81 715 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 KLRD1Q13241 179 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 C8orf86Q6ZUL3 223 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 LYPD6BQ8NI32 183 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 MPDZO75970 2070 aa12.05□□□□□ -0.48
SCN3B-201ENST00000299333 IL18BPO95998 194 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 SS18Q15532 418 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 IGHG2P01859 326 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 RNASE2P10153 161 aaKnown RBP12.04□□□□□ -0.48
SCN3B-201ENST00000299333 SSC4DQ8WTU2 575 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 DAD1P61803 113 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 CDPF1Q6NVV7 123 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 TRPT1Q86TN4 253 aaKnown RBP12.04□□□□□ -0.48
SCN3B-201ENST00000299333 LGALS9BQ3B8N2 356 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 LGALS9CQ6DKI2 356 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 TMEM141Q96I45 108 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 UBE2E2Q96LR5 201 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 ZNF492Q9P255 531 aa12.04□□□□□ -0.48
SCN3B-201ENST00000299333 TRAV26-2A0A0B4J265 109 aa12.03□□□□□ -0.48
SCN3B-201ENST00000299333 TRAV25A0A0B4J276 109 aa12.03□□□□□ -0.48
SCN3B-201ENST00000299333 WIPF3A6NGB9 483 aa12.03□□□□□ -0.48
SCN3B-201ENST00000299333 TDRD6O60522 2096 aaKnown RBP12.03□□□□□ -0.48
SCN3B-201ENST00000299333 PRSS46E5RG02 174 aa12.03□□□□□ -0.48
SCN3B-201ENST00000299333 PARP14Q460N5 1801 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms