RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 CEND1Q8N111 149 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 ZNF714Q96N38 554 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 SPATA25Q9BR10 227 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 PRSS22Q9GZN4 317 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 SIT1Q9Y3P8 196 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 TRAV40A0A0B4J280 105 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 NPYP01303 97 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 TCTEX1D4Q5JR98 221 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 SMIM20Q8N5G0 67 aa8.15□□□□□ -1.1
CLDN1-201ENST00000295522 MRPL20Q9BYC9 149 aaKnown RBP8.15□□□□□ -1.1
CLDN1-201ENST00000295522 RPUSD1Q9UJJ7 312 aaKnown RBP8.15□□□□□ -1.1
CLDN1-201ENST00000295522 TRBV20-1A0A075B6N2 111 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 A0A096LNJ9 63 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 TMEM189A5PLL7 270 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 C19orf71A6NCJ1 209 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 IGKCP01834 107 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 WT1-ASQ06250 92 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 C12orf74Q32Q52 190 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 MAFAQ8NHW3 353 aaPredicted RBP8.15□□□□□ -1.11
CLDN1-201ENST00000295522 CCL13Q99616 98 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 MLST8Q9BVC4 326 aa8.15□□□□□ -1.11
CLDN1-201ENST00000295522 PRSS29PA6NIE9 313 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 PRRG2O14669 202 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 SIVA1O15304 175 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 CT83Q5H943 113 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 OR10X1Q8NGY0 326 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 CACNG8Q8WXS5 425 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 PGPEP1Q9NXJ5 209 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 BDP1A6H8Y1 2624 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 FAM90A27PA6NNH2 459 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 PRB3Q04118 309 aaPredicted RBP8.14□□□□□ -1.11
CLDN1-201ENST00000295522 DDB2Q92466 427 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 GFRA4Q9GZZ7 299 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 S4R3C0 116 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 ASPMQ8IZT6 3477 aa8.14□□□□□ -1.11
CLDN1-201ENST00000295522 CACNA1HO95180 2353 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 TMEM8BA6NDV4 472 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 SCGB1C2P0DMR2 95 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 HERV-K104P63124 156 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 SCGB1D4Q6XE38 83 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 GCSAMQ8N6F7 178 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 C17orf77Q96MU5 243 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 PSG8Q9UQ74 426 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 HIGD1AQ9Y241 93 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 NPIPB5A8MRT5 1133 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 IL4P05112 153 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 SRSF9Q13242 221 aaKnown RBP eCLIP8.13□□□□□ -1.11
CLDN1-201ENST00000295522 MRPL51Q4U2R6 128 aaKnown RBP8.13□□□□□ -1.11
CLDN1-201ENST00000295522 SHISA2Q6UWI4 295 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 SAP25Q8TEE9 199 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 RPEQ96AT9 228 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 C8orf49Q96NF6 230 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 ZNF492Q9P255 531 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 ORM1P02763 201 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 ARL3P36405 182 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 IL11RAQ14626 422 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 DEFB123Q8N688 67 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 TEX29Q8N6K0 151 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 FAM216BQ8N7L0 139 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 PRO3102Q9H379 93 aa8.13□□□□□ -1.11
CLDN1-201ENST00000295522 PRTN3P24158 256 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 XGP55808 180 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 FOXI1Q12951 378 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 RUSC1-AS1Q66K80 236 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 NCBP2LA6PVI3 153 aaKnown RBP8.12□□□□□ -1.11
CLDN1-201ENST00000295522 IGHV1-2P23083 117 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 SPRNQ5BIV9 151 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 KLF17Q5JT82 389 aaPredicted RBP8.12□□□□□ -1.11
CLDN1-201ENST00000295522 FAM90A1Q86YD7 464 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 MAP1LC3AQ9H492 121 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 E9PLD3 99 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 DPM2O94777 84 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 MEOX1P50221 254 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 C3orf36Q3SXR2 165 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 PRR7Q8TB68 274 aa8.12□□□□□ -1.11
CLDN1-201ENST00000295522 H7C2G1 150 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 GATA1P15976 413 aaPredicted RBP8.11□□□□□ -1.11
CLDN1-201ENST00000295522 TPSG1Q9NRR2 321 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 PCNX1Q96RV3 2341 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 PLGLAQ15195 96 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 CR1LQ2VPA4 569 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 FAM104BQ5XKR9 115 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 Q6ZUT4 128 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 TMEM158Q8WZ71 300 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 DPF1Q92782 380 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 MRPL35Q9NZE8 188 aaKnown RBP8.11□□□□□ -1.11
CLDN1-201ENST00000295522 KLF12Q9Y4X4 402 aa8.11□□□□□ -1.11
CLDN1-201ENST00000295522 C16orf97H3BN30 126 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 C17orf58Q2M2W7 97 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 ZFAND6Q6FIF0 208 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 C1orf122Q6ZSJ8 110 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 C3orf56Q8N813 242 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 MAPKAPK5-AS1Q8N8E1 139 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 IGKV1D-37A0A075B6S9 117 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 HOXA3O43365 443 aaPredicted RBP8.1□□□□□ -1.11
CLDN1-201ENST00000295522 CECR9P0C854 216 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 CCL3L1P16619 93 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 DIAPH2-AS1Q14236 149 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 RRN3P1Q2M238 152 aa8.1□□□□□ -1.11
CLDN1-201ENST00000295522 Q8TAT8 98 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 190.4 ms