RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CRYGCP07315 174 aa10.53□□□□□ -0.72
CLN3-210ENST00000563874 LOXP28300 417 aaPredicted RBP10.53□□□□□ -0.72
CLN3-210ENST00000563874 TRGV9Q99603 122 aa10.53□□□□□ -0.72
CLN3-210ENST00000563874 NUDT3O95989 172 aa10.53□□□□□ -0.72
CLN3-210ENST00000563874 LOC102724200A0A096LPH7 203 aaPredicted RBP10.52□□□□□ -0.72
CLN3-210ENST00000563874 PSG1P11464 419 aa10.52□□□□□ -0.72
CLN3-210ENST00000563874 VAMP3Q15836 100 aa10.52□□□□□ -0.72
CLN3-210ENST00000563874 NUP37Q8NFH4 326 aa10.52□□□□□ -0.72
CLN3-210ENST00000563874 TPPP3Q9BW30 176 aa10.52□□□□□ -0.72
CLN3-210ENST00000563874 LOC105371242A0A075B767 164 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 FBLN7Q53RD9 439 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 Q86TA4 180 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 TMEM116Q8NCL8 245 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 PRSS33Q8NF86 280 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 C8orf46Q8TAG6 207 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 IGHV1-8P0DP01 117 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 C17orf77Q96MU5 243 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 TMUB1Q9BVT8 246 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 HIGD1AQ9Y241 93 aa10.52□□□□□ -0.73
CLN3-210ENST00000563874 CRXO43186 299 aaPredicted RBP10.51□□□□□ -0.73
CLN3-210ENST00000563874 CEACAM4O75871 244 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 RBP4P02753 201 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 HTR1DP28221 377 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 MC5RP33032 325 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 SCGB2A2Q13296 93 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 PIP4P1Q86T03 277 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 CHCHD1Q96BP2 118 aaKnown RBP10.51□□□□□ -0.73
CLN3-210ENST00000563874 BSNQ9UPA5 3926 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 PPBPP02775 128 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 OR4C5Q8NGB2 326 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 SMIM12Q96EX1 92 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 ZNF492Q9P255 531 aa10.51□□□□□ -0.73
CLN3-210ENST00000563874 C16orf97H3BN30 126 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 SNAI2O43623 268 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 ARMS2P0C7Q2 107 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 LGALS7P47929 136 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 DLX6P56179 175 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 CT83Q5H943 113 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 LINC00311Q8N616 119 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 SRSF12Q8WXF0 261 aaKnown RBP10.5□□□□□ -0.73
CLN3-210ENST00000563874 SLC25A39Q9BZJ4 359 aaPredicted RBP10.5□□□□□ -0.73
CLN3-210ENST00000563874 FBXL15Q9H469 300 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 ST20Q9HBF5 79 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.5□□□□□ -0.73
CLN3-210ENST00000563874 MUC21A0A0G2JKD1 596 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 A0A0G2JNJ9 132 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 MUC21A0A140T8X8 626 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 IGLV2-11P01706 119 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 MUC21Q5SSG8 566 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 SLC25A34Q6PIV7 304 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 Q9UFV3 132 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 SIGLEC9Q9Y336 463 aa10.5□□□□□ -0.73
CLN3-210ENST00000563874 TMEM155Q4W5P6 130 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 FAM162BQ5T6X4 162 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 Q6ZS92 163 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 MAP1LC3CQ9BXW4 147 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 TMEM191AQ9H0A3 160 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 ZNF785A8K8V0 405 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 THBDP07204 575 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 FAM71F2Q6NXP2 309 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 IGFBPL1Q8WX77 278 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 ZC2HC1AQ96GY0 325 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 TMEM133Q9H2Q1 129 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 SOX21Q9Y651 276 aaPredicted RBP10.49□□□□□ -0.73
CLN3-210ENST00000563874 S4R3C0 116 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 LRBAP50851 2863 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 RELNP78509 3460 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 A0A087X0K7 114 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 IGHV2-70DA0A0C4DH43 119 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 OR2T8A6NH00 312 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 LYNX1G3V0Z9 82 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 APOHP02749 345 aaPredicted RBP10.49□□□□□ -0.73
CLN3-210ENST00000563874 LIPFP07098 398 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 IGLC1P0CG04 106 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 LYNX1P0DP58 116 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 COX7A1P24310 79 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 FOXE3Q13461 319 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 PRSS57Q6UWY2 283 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 GFRA4Q9GZZ7 299 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 DYNLRB1Q9NP97 96 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 INSIG2Q9Y5U4 225 aa10.49□□□□□ -0.73
CLN3-210ENST00000563874 A0A1W2PRD5 423 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 A0A1W2PRF3 423 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 A0A1W2PRM7 423 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 TCTAP57738 103 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 PPP1R27Q86WC6 154 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 TEX45Q8NA69 505 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 FAM57AQ8TBR7 257 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 NDFIP1Q9BT67 221 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 OTORQ9NRC9 128 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 F11RQ9Y624 299 aaKnown RBP10.48□□□□□ -0.73
CLN3-210ENST00000563874 ZFHX2Q9C0A1 2572 aaPredicted RBP10.48□□□□□ -0.73
CLN3-210ENST00000563874 TEX22C9J3V5 150 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 NPIPB6E9PJ23 425 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 TNFRSF13BO14836 293 aaPredicted RBP10.48□□□□□ -0.73
CLN3-210ENST00000563874 BVES-AS1Q5T3Y7 98 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 ZNF48Q96MX3 618 aaPredicted RBP10.48□□□□□ -0.73
CLN3-210ENST00000563874 RASL11BQ9BPW5 248 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 SVEP1Q4LDE5 3571 aa10.48□□□□□ -0.73
CLN3-210ENST00000563874 ABCA4P78363 2273 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 514.6 ms