RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	RPL28	P46779	137 aa	Known RBP	0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	MARCKSL1	P49006	195 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	BLVRA	P53004	296 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	AP2S1	P53680	142 aa	Predicted RBP	0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	TNFAIP6	P98066	277 aa	Predicted RBP	0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	RSU1	Q15404	277 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	TNFAIP8L3	Q5GJ75	292 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	SAPCD1	Q5SSQ6	148 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	C1orf195	Q5TG92	126 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	SSX8	Q7RTT4	187 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	DCXR	Q7Z4W1	244 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	RPS19BP1	Q86WX3	136 aa	Known RBP	0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	PACRGL	Q8N7B6	248 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	GPR32P1	Q8NGA4	272 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	TESC	Q96BS2	214 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	DIRAS2	Q96HU8	199 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	HSPB9	Q9BQS6	159 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	LLPH	Q9BRT6	129 aa	Known RBP	0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	ANGPT4	Q9Y264	503 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	COQ4	Q9Y3A0	265 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	PXMP4	Q9Y6I8	212 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	PKHD1	P08F94	4074 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	ABCA4	P78363	2273 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	USF3	Q68DE3	2245 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	STARD9	Q9P2P6	4700 aa		0.76	□□□□□ -2.29
PRKDC-210	ENST00000541488	DNAH9	Q9NYC9	4486 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	ABCA1	O95477	2261 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	EVC2	Q86UK5	1308 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488		A0A0D9SEW6	157 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	TRBV6-5	A0A0K0K1A5	114 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	TMEM269	A0A1B0GVZ9	245 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	TRAPPC13	A5PLN9	417 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	MEIS3P1	A6NDR6	274 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	TLCD2	A6NGC4	264 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	C21orf140	B9A014	251 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488		H3BT86	120 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	NOS1AP	O75052	506 aa	Predicted RBP	0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	DCTN3	O75935	186 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	CIAO1	O76071	339 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	NSA2	O95478	260 aa	Known RBP	0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	C1QA	P02745	245 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	ISG15	P05161	165 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	REG1A	P05451	166 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	SRP19	P09132	144 aa	Known RBP	0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	KCNE1	P15382	129 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	GPX2	P18283	190 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	HOXA6	P31267	233 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	CSN1S1	P47710	185 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	RAB13	P51153	203 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	NAA20	P61599	178 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	COTL1	Q14019	142 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	ELOB	Q15370	118 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	NNAT	Q16517	81 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	NDUFA5	Q16718	116 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	TMEM155	Q4W5P6	130 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	LELP1	Q5T871	98 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	GLT8D1	Q68CQ7	371 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	CD200R1L	Q6Q8B3	271 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	UNQ6190/PRO20217	Q6UXQ8	127 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	DEFB125	Q8N687	156 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	C3orf56	Q8N813	242 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	RAB8B	Q92930	207 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	FAM96A	Q9H5X1	160 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	CXorf21	Q9HAI6	301 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	MED9	Q9NWA0	146 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	MYOF	Q9NZM1	2061 aa		0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	MYH9	P35579	1960 aa	Known RBP	0.75	□□□□□ -2.29
PRKDC-210	ENST00000541488	KNTC1	P50748	2209 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	MYH10	P35580	1976 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	DENND4C	Q5VZ89	1909 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	IRGM	A1A4Y4	181 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	LEPROT	O15243	131 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	MRPS14	O60783	128 aa	Known RBP	0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	CRP	P02741	224 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	RPSA	P08865	295 aa	Known RBP	0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	TFPT	P0C1Z6	253 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	FAM228B	P0C875	321 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	SULT1A3	P0DMM9	295 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	SULT1A4	P0DMN0	295 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	LYNX1	P0DP58	116 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	S100A7	P31151	101 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	FXYD2	P54710	66 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	OR4D2	P58180	307 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	RAB5B	P61020	215 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	C7orf65	Q6ZTY9	151 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	SLC36A1	Q7Z2H8	476 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	C10orf67	Q8IYJ2	551 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	OR1M1	Q8NGA1	313 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	ACOT12	Q8WYK0	555 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	ANKRD7	Q92527	254 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488		Q96M85	177 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	NAT8	Q9UHE5	227 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	LSM5	Q9Y4Y9	91 aa	Known RBP	0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	SOX21	Q9Y651	276 aa	Predicted RBP	0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	CIT	O14578	2027 aa		0.74	□□□□□ -2.29
PRKDC-210	ENST00000541488	F5	P12259	2224 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	IGKV3D-7	A0A0C4DH55	119 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	IGKV3OR2-268	A0A0C4DH90	116 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	TRBV10-2	A0A0K0K1G8	114 aa		0.73	□□□□□ -2.29

Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms