RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	HMGB3	O15347	200 aa	Known RBP	0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	KLF7	O75840	302 aa	Predicted RBP	0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	MYL5	Q02045	173 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	KRTAP21-1	Q3LI58	79 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	C1orf134	Q5TEV5	83 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	DHRS4L2	Q6PKH6	230 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	GKN2	Q86XP6	184 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	OR5D14	Q8NGL3	314 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695		Q8TAT8	98 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	C10orf95	Q9H7T3	257 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	NISCH	Q9Y2I1	1504 aa		0.42	□□□□□ -2.34
SMC4-223	ENST00000493695	CEP164	Q9UPV0	1460 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	COL24A1	Q17RW2	1714 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	MYLK	Q15746	1914 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	IGLV3-32	A0A0A0MS00	114 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	ERC2-IT1	O76042	136 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	NCALD	P61601	193 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	LINC00575	Q6W349	94 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	PPTC7	Q8NI37	304 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	DGCR14	Q96DF8	476 aa	Known RBP	0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	ZC2HC1A	Q96GY0	325 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	PRRT1	Q99946	306 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	NPCDR1	Q9BY65	106 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	PSTPIP2	Q9H939	334 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	PRND	Q9UKY0	176 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	ARL5A	Q9Y689	179 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	ZNF462	Q96JM2	2506 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	NCAPD3	P42695	1498 aa		0.41	□□□□□ -2.34
SMC4-223	ENST00000493695	ASH1L	Q9NR48	2969 aa	Known RBP	0.4	□□□□□ -2.34
SMC4-223	ENST00000493695	CRH	P06850	196 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	OR10J4	P0C629	311 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	CXCL8	P10145	99 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	COX7C	P15954	63 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	S100A7A	Q86SG5	101 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	OR5AS1	Q8N127	324 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	POP5	Q969H6	163 aa	Known RBP	0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	MUCL1	Q96DR8	90 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	CHMP6	Q96FZ7	201 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	PYCARD	Q9ULZ3	195 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	TNFSF18	Q9UNG2	199 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695	FRMPD1	Q5SYB0	1578 aa		0.4	□□□□□ -2.35
SMC4-223	ENST00000493695		K7EIL1	84 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	CD2	P06729	351 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	ARF6	P62330	175 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	CDK6	Q00534	326 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	TMED2	Q15363	201 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	EIF5AL1	Q6IS14	154 aa	Known RBP	0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	PXT1	Q8NFP0	134 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	OR5D16	Q8NGK9	328 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	PBOV1	Q9GZY1	135 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	DOCK4	Q8N1I0	1966 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	MYO18A	Q92614	2054 aa	Known RBP	0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	FRAS1	Q86XX4	4008 aa		0.39	□□□□□ -2.35
SMC4-223	ENST00000493695	HEATR1	Q9H583	2144 aa	Known RBP	0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	ZFC3H1	O60293	1989 aa	Known RBP	0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	NUP210L	Q5VU65	1888 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	TRAV27	A0A087WT01	109 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	DUXB	A0A1W2PPF3	345 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695		F8W1H4	67 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	CST8	O60676	142 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	INSL3	P51460	131 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	SPATA8	Q6RVD6	105 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	ARPIN	Q7Z6K5	226 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	OR10AG1	Q8NH19	301 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	RAB37	Q96AX2	223 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	GGACT	Q9BVM4	153 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	POPDC3	Q9HBV1	291 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	ASB4	Q9Y574	426 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	UNC13C	Q8NB66	2214 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	CIT	O14578	2027 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	KMT2D	O14686	5537 aa		0.38	□□□□□ -2.35
SMC4-223	ENST00000493695	SNRNP200	O75643	2136 aa	Known RBP	0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	TRAV5	A0A0B4J249	113 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	PHGR1	C9JFL3	82 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	AIP	O00170	330 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	NDUFC2	O95298	119 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	IGLV3-1	P01715	115 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	NFYB	P25208	207 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	RAB5C	P51148	216 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	MRPS25	P82663	173 aa	Known RBP	0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	TMEM14EP	Q6UXP3	125 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	TEN1	Q86WV5	123 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	PSMF1	Q92530	271 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	HYLS1	Q96M11	299 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	PHB2	Q99623	299 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	SH3BGRL3	Q9H299	93 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	MED29	Q9NX70	200 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	OR52A1	Q9UKL2	312 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	UHRF1BP1	Q6BDS2	1440 aa		0.37	□□□□□ -2.35
SMC4-223	ENST00000493695	EIF3A	Q14152	1382 aa	Known RBP	0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	ASCC3	Q8N3C0	2202 aa	Known RBP	0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	OR2T8	A6NH00	312 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695		H3BRM9	83 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695		M0R233	179 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	TRGC2	P03986	189 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	FOXA3	P55318	350 aa	Predicted RBP	0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	GNG5	P63218	68 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	SCGB2B2	Q4G0G5	96 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	GLIPR1L1	Q6UWM5	242 aa		0.36	□□□□□ -2.35
SMC4-223	ENST00000493695	ZNF431	Q8TF32	576 aa	Predicted RBP	0.36	□□□□□ -2.35

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